View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_low_45 (Length: 254)
Name: NF17737_low_45
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5903898 - 5903659
Alignment:
| Q |
1 |
ctataaaataaaagaatgaatctccatataatgagctaattattttgataatcatctagctaatccaatattagctaacatttcagcatcaatattatct |
100 |
Q |
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| T |
5903898 |
ctataaaataaaagaatgaatctccatataatgagctaattattttgataatcatctagctaatccaatattagctaacatttcagcatcaatattatct |
5903799 |
T |
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| Q |
101 |
tatctaaagatgtgaaaaa-ctcttaagttcataagctttgttagcgatacacaactcttcctacaacaattacttgtaggccaaggaacaatagaaaca |
199 |
Q |
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| T |
5903798 |
tctctaaagatgtgaaaaaactcttaagttcataagctttgttagcgatacacaactcttcctacaacaattacttgtaggccaaggaacaatagaaaca |
5903699 |
T |
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| Q |
200 |
tcgttgaaggctagaactacaagttgagagtcacattcat |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
5903698 |
tcgttgaaggctagaactacaagttgagagtcacattcat |
5903659 |
T |
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