View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_low_46 (Length: 253)
Name: NF17737_low_46
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 23669912 - 23670155
Alignment:
| Q |
1 |
caccctaaccctaacnnnnnnngtgtatatatttatgaaagcagagaacgtggttagaagcctcactactggtgaacttggcagtgatcgtctttactct |
100 |
Q |
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| T |
23669912 |
caccctaaccctaacaaaaaaagtgtatatatttatgaaagcagagaacgtggttagaagcctcactactggtgaacttggcagtgatcgtctttactct |
23670011 |
T |
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| Q |
101 |
tactgtgatggtttgtatattccttctctcttatcttcgttaatctagttgtgcttaatagattagggttttctatttttatagtctgaatagttattga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23670012 |
tactgtgatggtttgtatattccttctctcttatcttcgttaatctagttgtgcttaatagattagggttttctatttttatagtctgaatagttattga |
23670111 |
T |
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| Q |
201 |
aacactgggttttagggtttgttgtctcttttatattttcttcg |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23670112 |
aacactgggttttagggtttgttgtctcttttatatttttttcg |
23670155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 24042188 - 24042431
Alignment:
| Q |
1 |
caccctaaccctaacnnnnnnngtgtatatatttatgaaagcagagaacgtggttagaagcctcactactggtgaacttggcagtgatcgtctttactct |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24042188 |
caccctaaccctaacaaaaaaagtgtatatatttatgaaagcagagaacgtggttagaagcctcactactggtgaacttggcagtgatcgtctttactct |
24042287 |
T |
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| Q |
101 |
tactgtgatggtttgtatattccttctctcttatcttcgttaatctagttgtgcttaatagattagggttttctatttttatagtctgaatagttattga |
200 |
Q |
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| T |
24042288 |
tactgtgatggtttgtatattccttctctcttatcttcgttaatctagttgtgcttaatagattagggttttctatttttatagtctgaatagttattga |
24042387 |
T |
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| Q |
201 |
aacactgggttttagggtttgttgtctcttttatattttcttcg |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24042388 |
aacactgggttttagggtttgttgtctcttttatatttttttcg |
24042431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 23685678 - 23685852
Alignment:
| Q |
52 |
ggttagaagcctcactactggtgaacttggcagtgatcgtctttactcttactgtgatggtttgtatattccttctctc-------ttatcttcgttaat |
144 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| | || |||||||||| |||||| |||| |||||||||| ||| |
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| T |
23685678 |
ggttagaagcctcacc---ggtgaacttggcagtgatcgtctttactctgattggaatggtttgtaacttccttttctcttatctcttatcttcgtgaat |
23685774 |
T |
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| Q |
145 |
ctagttgtgcttaatagattagggttttctatttttatagtctgaatagttattgaaacactgggttttagggtttgt |
222 |
Q |
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| T |
23685775 |
ctagttgtgcttattagattagggttttctatttatacagtatgaatagctattgaaacgctgggttttagggtttgt |
23685852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 24057915 - 24058089
Alignment:
| Q |
52 |
ggttagaagcctcactactggtgaacttggcagtgatcgtctttactcttactgtgatggtttgtatattccttctctc-------ttatcttcgttaat |
144 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| | || |||||||||| |||||| |||| |||||||||| ||| |
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| T |
24057915 |
ggttagaagcctcacc---ggtgaacttggcagtgatcgtctttactctgattggaatggtttgtaacttccttttctcttatctcttatcttcgtgaat |
24058011 |
T |
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| Q |
145 |
ctagttgtgcttaatagattagggttttctatttttatagtctgaatagttattgaaacactgggttttagggtttgt |
222 |
Q |
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||||||||||||| |||||||||||||||||||| || ||| ||||||| ||||||||| |||||||||||||||||| |
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| T |
24058012 |
ctagttgtgcttattagattagggttttctatttatacagtatgaatagctattgaaacgctgggttttagggtttgt |
24058089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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