View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_low_47 (Length: 253)
Name: NF17737_low_47
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 40121603 - 40121362
Alignment:
| Q |
2 |
tgtggtgctttgaaggtcaaggttgtgatgaggctgtggaggcatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtttataggatcc |
101 |
Q |
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| T |
40121603 |
tgtggtgctttgaaggtcaaggttgtgatgaggctgtggaggcatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtttattggatcc |
40121504 |
T |
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| Q |
102 |
actttgtatactttgataggtgttggtgccattggtgctattggtgccttcttattccatgtctttgttggtgactttcttactgagtgaagccaagaat |
201 |
Q |
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| T |
40121503 |
actttgtatactttgataggtgttggtgccattggtgctattggtgccttcttattccatgtctttgttggtgactttcttactgagtgaagacaagaat |
40121404 |
T |
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| Q |
202 |
atttggattcaaaagggtattcatttttcattgatccctttg |
243 |
Q |
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| T |
40121403 |
atttggattcaaaagggtattcatttttcattgatccctttg |
40121362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 40092781 - 40092536
Alignment:
| Q |
1 |
ttgtggtgctttgaaggtcaaggttgtgatgaggctgtggaggcatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtttataggatc |
100 |
Q |
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| T |
40092781 |
ttgtggtgctttgaagatcaagtttgtgatgaggctgtgaaggtatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtttattggatc |
40092682 |
T |
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| Q |
101 |
cactttgtatactttgataggtgttggtgccattggtgctattggtgccttcttattccatgtctttgttggtgactttcttactgagtgaagccaagaa |
200 |
Q |
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| T |
40092681 |
cactttgtatactttggcaggtgttggtgccattggtgctattggtgccttcttattccatgtctttgttggtgactttcttactgagtgaagccaagaa |
40092582 |
T |
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| Q |
201 |
tatttggattcaaaagggtattcatttttcattgatccctttgctt |
246 |
Q |
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| T |
40092581 |
tatttggattcaaaagggtattcatttttcattgatccatttgctt |
40092536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 40125253 - 40125011
Alignment:
| Q |
1 |
ttgtggtgctttgaaggtcaaggttgtgatgaggctgtggaggcatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtttataggatc |
100 |
Q |
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|||||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40125253 |
ttgtggtgctttgaagatcaagtttgtgatgaggctgtgaaggtatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtttattggatc |
40125154 |
T |
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| Q |
101 |
cactttgtatactttgataggtgttggtgccattggtgctattggtgccttcttattccatgtctttgttggtgactttcttactgagtgaagccaagaa |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
40125153 |
cactttgtatactttggcaggtgttggtgccattggtgctattggtaacttcttattccatgtctttacaggtgattttcttactgagtgaagccaagaa |
40125054 |
T |
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| Q |
201 |
tatttggattcaaaagggtattcatttttcattgatccctttg |
243 |
Q |
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|| | | || | ||||| |||||| ||| |||||||| |||| |
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| T |
40125053 |
taatgagtttgacaagggcattcatgtttaattgatccatttg |
40125011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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