View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_low_5 (Length: 550)
Name: NF17737_low_5
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 11 - 550
Target Start/End: Complemental strand, 40729501 - 40728962
Alignment:
| Q |
11 |
catcatcatcagcatcatggtcactaacagcctggaacctccgtctcctccgtaacatgggtggcggtcctcgcaccttccccggcggcgtaagcaaatg |
110 |
Q |
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| T |
40729501 |
catcatcagcagcatcatggtcactaacagcctggaacctccgtctcctccgtaacatgggtggcggtcctcgcaccttccccggcggcgtaagcaaatg |
40729402 |
T |
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| Q |
111 |
gaaatggaaacgtatgcacgaaaaacgcgccaaagagaaacagcgtaaccttctcgaacaagagaaacaactctaccaagctcgtattcgatctcacatt |
210 |
Q |
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| T |
40729401 |
gaaatggaaacgtatgcacgaaaaacgcgccaaagagaaacagcgtaaccttctcgaacaagagaaacaactctaccaagctcgtattcgatctcacatt |
40729302 |
T |
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| Q |
211 |
cgctccaccctctcaccttcttcatattcatcttcctccaccactcataaccctatttcccctgatcaacacatcaaagccctcgccgatcgtttcatga |
310 |
Q |
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| T |
40729301 |
cgctccactctctcaccttcttcatattcatcttcctccaccactcataatcctatttcccctgatcaacacatcaaagccctcgccgatcgtttcatga |
40729202 |
T |
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| Q |
311 |
aagacggtgctctagatctctggaacgacctcgacggcccagaaacctaccagacccaaacccaagcccaggcccagattcaatcccaagcatcgccgca |
410 |
Q |
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| T |
40729201 |
aagacggtgctctagatctctggaacgacctcgacggccctgaaacctaccagacccaaacccaagcccaggcccagattcaatcccaagcatcgccgca |
40729102 |
T |
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| Q |
411 |
aattgatttacgcagtcggaatttgaataactattcacaaattagggggtaccgttctgttcctgaggttagggattctattcgttccgttcctagggtt |
510 |
Q |
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| T |
40729101 |
aattgatttacgcagtcggaatttgaataactattcacaaattaggggctaccgttctgttcctgaggttaaggattctattcgttccgttcctagggtt |
40729002 |
T |
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| Q |
511 |
agggatttgagtgatcagaatagggttgggacggaaaagc |
550 |
Q |
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| T |
40729001 |
agggatttgagtgatcagaatagggttgggacggaaaagc |
40728962 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 540
Target Start/End: Complemental strand, 50842002 - 50841955
Alignment:
| Q |
492 |
tcgttccgttcctagggttagggatttgagtgatcagaatagggttggg |
540 |
Q |
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| T |
50842002 |
tcgttctgttcctagg-ttagggatttgagtgataagaagagggttggg |
50841955 |
T |
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