View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_low_50 (Length: 245)
Name: NF17737_low_50
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 23669926 - 23669709
Alignment:
| Q |
9 |
gttagggttagggtgagttaataaaaaggataaccacaatttcttatattgtgctgatcctaatttgcagaaaaaatggcaactttagtcgaccccgtga |
108 |
Q |
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| T |
23669926 |
gttagggttagggtgagttgataaaaaggataaccacaatttcttatattgtgctgatcctaatttgcaggaaaaatggcaactttagtccaccccgtga |
23669827 |
T |
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| Q |
109 |
acagaagaaggccaatgagaaagcattgttataagatgtgggaaacattgtttgatattcatacaaagtaccgtccaatcaagcctattggccgaggaac |
208 |
Q |
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| T |
23669826 |
acagaaaaaggccaaggagaaagcattgttataagatgtgggaaacattgtttgatattcatacaaagtaccgtccaatcaagcctattggccgaggaac |
23669727 |
T |
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| Q |
209 |
atatggtgtggtgtgctc |
226 |
Q |
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| T |
23669726 |
atatggcgtggtgtgctc |
23669709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 24042202 - 24041985
Alignment:
| Q |
9 |
gttagggttagggtgagttaataaaaaggataaccacaatttcttatattgtgctgatcctaatttgcagaaaaaatggcaactttagtcgaccccgtga |
108 |
Q |
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| T |
24042202 |
gttagggttagggtgagttgataaaaaggataaccacaatttcttatattgtgctgatcctaatttgcaggaaaaatggcaactttagtccaccccgtga |
24042103 |
T |
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| Q |
109 |
acagaagaaggccaatgagaaagcattgttataagatgtgggaaacattgtttgatattcatacaaagtaccgtccaatcaagcctattggccgaggaac |
208 |
Q |
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| T |
24042102 |
acagaaaaaggccaaggagaaagcattgttataagatgtgggaaacattgtttgatattcatacaaagtaccgtccaatcaagcctattggccgaggaac |
24042003 |
T |
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| Q |
209 |
atatggtgtggtgtgctc |
226 |
Q |
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| T |
24042002 |
atatggcgtggtgtgctc |
24041985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 73 - 226
Target Start/End: Complemental strand, 23685544 - 23685391
Alignment:
| Q |
73 |
ttgcagaaaaaatggcaactttagtcgaccccgtgaacagaagaaggccaatgagaaagcattgttataagatgtgggaaacattgtttgatattcatac |
172 |
Q |
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|||||| || ||||||||||||||| || |||| || ||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23685544 |
ttgcaggaataatggcaactttagtggaacccgagatcagaaataggccaaggagaaagcattgttatacaatgtgggaaacattgtttgatattcatac |
23685445 |
T |
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| Q |
173 |
aaagtaccgtccaatcaagcctattggccgaggaacatatggtgtggtgtgctc |
226 |
Q |
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| T |
23685444 |
aaagtatcgtccaatcaagcctattggccgagcaacatatggcatggtgtgctc |
23685391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 73 - 226
Target Start/End: Complemental strand, 24057781 - 24057628
Alignment:
| Q |
73 |
ttgcagaaaaaatggcaactttagtcgaccccgtgaacagaagaaggccaatgagaaagcattgttataagatgtgggaaacattgtttgatattcatac |
172 |
Q |
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| T |
24057781 |
ttgcaggaataatggcaactttagtggaacccgagatcagaaataggccaaggagaaagcattgttatacaatgtgggaaacattgtttgatattcatac |
24057682 |
T |
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| Q |
173 |
aaagtaccgtccaatcaagcctattggccgaggaacatatggtgtggtgtgctc |
226 |
Q |
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| T |
24057681 |
aaagtatcgtccaatcaagcctattggccgagcaacatatggcatggtgtgctc |
24057628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 35680698 - 35680742
Alignment:
| Q |
182 |
tccaatcaagcctattggccgaggaacatatggtgtggtgtgctc |
226 |
Q |
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| T |
35680698 |
tccaattaaggctattggcagaggaacatatggtgtggtgtgctc |
35680742 |
T |
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