View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_low_55 (Length: 237)
Name: NF17737_low_55
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 87 - 224
Target Start/End: Complemental strand, 5450231 - 5450094
Alignment:
| Q |
87 |
ctttgacagtatataatgaaaatccaatcacctgcacctaaactattttatcatccctatattttccaataattcaccacaccacccttcgacttattat |
186 |
Q |
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| T |
5450231 |
ctttgacagtatataatgaaaatccaatcacctgcacctaaactattttatcatccctatattttccaataattcaccacaccacccttcgacttattat |
5450132 |
T |
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| Q |
187 |
gcatttaaaaacaactccatgttttgtaacttccagaa |
224 |
Q |
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| T |
5450131 |
gcatttaaaaacaactccatgttttgtaacttccagaa |
5450094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 29269232 - 29269149
Alignment:
| Q |
1 |
tgcagaaagcaacacctctctctggtccaatgcaaggttcccacctacagactgccttgaaaaatgagcctgaagcaaggcatt |
84 |
Q |
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| T |
29269232 |
tgcagaaagcagtacctccctctggtccaatgatagattcccaccaacagattgcctagagaaatgggcctgcagcaaggcatt |
29269149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 1680672 - 1680765
Alignment:
| Q |
1 |
tgcagaaagcaacacctctctctggtccaatgcaaggttcccacctacagactgccttgaaaaatgagcctgaagcaaggcattggctttgaca |
94 |
Q |
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| T |
1680672 |
tgcagaaagcaacacctctctctggtccaatgcaaggttcccacctacagactgccttgaaaaatgagcctgaagcaaggcattggctttgaca |
1680765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 2800056 - 2799963
Alignment:
| Q |
1 |
tgcagaaagcaacacctctctctggtccaatgcaaggttcccacctacagactgccttgaaaaatgagcctgaagcaaggcattggctttgaca |
94 |
Q |
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| T |
2800056 |
tgcagaaagcaacacctctctctggtccaatgcaaggttcccacctacaaactgccatgaaaaatgagcctgaagcaaggcattggctttgaca |
2799963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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