View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_low_57 (Length: 237)
Name: NF17737_low_57
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_57 |
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| [»] scaffold0126 (2 HSPs) |
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Alignment Details
Target: scaffold0126 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 23359 - 23419
Alignment:
| Q |
1 |
caaataaaacattattaattcacccaaaaaactatataataaatgtttttaatattttatt |
61 |
Q |
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| T |
23359 |
caaataaaacaatattaattcactcaaaaaactatataatacatgtttttactattttatt |
23419 |
T |
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Target: scaffold0126; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 23466 - 23513
Alignment:
| Q |
75 |
ttacttcataataaaatgataagggtccattttttagaggaccatttt |
122 |
Q |
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| T |
23466 |
ttacttcataataaaatgataagggtccatttttgagaggtccatttt |
23513 |
T |
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