View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17737_low_59 (Length: 230)

Name: NF17737_low_59
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17737_low_59
NF17737_low_59
[»] chr6 (4 HSPs)
chr6 (60-199)||(10374930-10375069)
chr6 (97-148)||(34208771-34208823)
chr6 (107-168)||(1103526-1103587)
chr6 (100-204)||(2943898-2944001)
[»] chr7 (4 HSPs)
chr7 (87-178)||(11918525-11918616)
chr7 (107-168)||(6629549-6629610)
chr7 (107-176)||(12484154-12484222)
chr7 (107-176)||(12505584-12505652)
[»] chr2 (7 HSPs)
chr2 (118-178)||(17842062-17842122)
chr2 (87-202)||(18593423-18593538)
chr2 (107-168)||(8941186-8941247)
chr2 (107-178)||(31067695-31067766)
chr2 (87-148)||(21713548-21713609)
chr2 (87-168)||(15324910-15324992)
chr2 (26-61)||(44017739-44017774)
[»] chr8 (2 HSPs)
chr8 (97-165)||(38802462-38802530)
chr8 (27-61)||(44021008-44021042)
[»] chr3 (2 HSPs)
chr3 (114-180)||(27646977-27647043)
chr3 (87-167)||(12032455-12032534)
[»] chr1 (2 HSPs)
chr1 (108-168)||(4650422-4650482)
chr1 (131-176)||(25123202-25123247)
[»] scaffold0070 (1 HSPs)
scaffold0070 (107-168)||(3543-3604)
[»] chr4 (2 HSPs)
chr4 (26-61)||(18882351-18882386)
chr4 (92-172)||(39668621-39668701)


Alignment Details
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 199
Target Start/End: Original strand, 10374930 - 10375069
Alignment:
Q  60 taccatgtgccatttaccttttgcatgttactttaagttgtttatttttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtctt 159  Q
    |||| |||| ||||||| || ||||  ||||||||||||||| ||| ||||||||||||| || || |||| ||||| ||||||||||||||| ||||||    
T  10374930 taccttgtgtcatttactttctgcaatttactttaagttgttaattgttatttgtgttgttacgatatcttaacattacattcgacattcctaatgtctt 10375029  T
Q  160 gacatcgtgtacgacatctgttttttacgtgtccgaattt 199  Q
    |||||||| ||| |||||| |||| |||||| | ||||||    
T  10375030 gacatcgtttacaacatctattttctacgtgccagaattt 10375069  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 34208823 - 34208771
Alignment:
Q  97 ttgtttatttttatttgtgttgtcacaatgtc-ttgacattgcattcgacatt 148  Q
    ||||||||| ||||||||||||| || ||||| ||||||||||||||||||||    
T  34208823 ttgtttattgttatttgtgttgttacgatgtctttgacattgcattcgacatt 34208771  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 1103526 - 1103587
Alignment:
Q  107 ttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtg 168  Q
    |||||||||||||||| ||||||||||||||   ||||||||    ||||||||||||||||    
T  1103526 ttatttgtgttgtcacgatgtcttgacattgtgctcgacattgtgcgtgtcttgacatcgtg 1103587  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 2944001 - 2943898
Alignment:
Q  100 tttatttttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtgtacgacatctgttttttacgtgtccgaattt 199  Q
    |||||| ||| ||||||| | ||  |||| ||||| |||||||||||||| | ||||| ||||||||| ||||| || ||| |  |||||||| ||||||    
T  2944001 tttattgttaattgtgtttttacgttgtcctgacactgcattcgacattctt-gtgtcgtgacatcgtatacgatatttgtctcctacgtgtcagaattt 2943903  T
Q  200 caaat 204  Q
    |||||    
T  2943902 caaat 2943898  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 178
Target Start/End: Original strand, 11918525 - 11918616
Alignment:
Q  87 ttactttaagttgtttatttttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtgtacgacatct 178  Q
    ||||||||||||||||||  ||||||||||||| || |||| |||||||||||||||||||| || ||||| ||||||||  ||||||||||    
T  11918525 ttactttaagttgtttatggttatttgtgttgttacgatgttttgacattgcattcgacattactggtgtcctgacatcggatacgacatct 11918616  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 6629549 - 6629610
Alignment:
Q  107 ttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtg 168  Q
    |||||||||||||||| |||| ||||||||| | | ||||||||  ||||||||||||||||    
T  6629549 ttatttgtgttgtcacgatgttttgacattgtacttgacattccgcgtgtcttgacatcgtg 6629610  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 12484222 - 12484154
Alignment:
Q  107 ttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtgtacgacat 176  Q
    ||||||||||||| ||| ||||| ||||| ||||| |||||| ||  |||||||||||||| ||||||||    
T  12484222 ttatttgtgttgttaca-tgtctggacatagcatttgacatttctgatgtcttgacatcgtatacgacat 12484154  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 12505652 - 12505584
Alignment:
Q  107 ttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtgtacgacat 176  Q
    ||||||||||||| ||| ||||| ||||| ||||| |||||| ||  |||||||||||||| ||||||||    
T  12505652 ttatttgtgttgttaca-tgtctagacatagcatttgacatttctgatgtcttgacatcgtatacgacat 12505584  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 17842062 - 17842122
Alignment:
Q  118 gtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtgtacgacatct 178  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||    
T  17842062 gtcacaatgtcttgacattgcattcgacattcctggtgtcttgacatcgtgctcgacatct 17842122  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 18593538 - 18593423
Alignment:
Q  87 ttactttaagttgtttatttttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtgtacgacatctgtttttta 186  Q
    |||||| || ||||||||| ||||||||||| | || ||||||||||||||||||||||||| || || || ||||||||| |||||||| |||  | ||    
T  18593538 ttacttaaatttgtttattgttatttgtgttattacgatgtcttgacattgcattcgacattactggtatcctgacatcgtatacgacatatgtcctcta 18593439  T
Q  187 cgtgtccgaatttcaa 202  Q
    |||| | |||||||||    
T  18593438 cgtgccagaatttcaa 18593423  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 8941247 - 8941186
Alignment:
Q  107 ttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtg 168  Q
    |||||||| |||||||||||||||||||||| | ||||||||||| ||||||||||||||||    
T  8941247 ttatttgtattgtcacaatgtcttgacattgtactcgacattcctcgtgtcttgacatcgtg 8941186  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 31067695 - 31067766
Alignment:
Q  107 ttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtgtacgacatct 178  Q
    |||||| ||||||||| |||| ||||||||| |||||| |||||||||||||||||||||||| | ||||||    
T  31067695 ttatttatgttgtcacgatgttttgacattgtattcgatattcctagtgtcttgacatcgtgttcaacatct 31067766  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 21713548 - 21713609
Alignment:
Q  87 ttactttaagttgtttatttttatttgtgttgtcacaatgtcttgacattgcattcgacatt 148  Q
    ||||||||||||||||||| ||||||||||| | |  |||||||||||||| ||||||||||    
T  21713548 ttactttaagttgtttattgttatttgtgttattatgatgtcttgacattgtattcgacatt 21713609  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 15324992 - 15324910
Alignment:
Q  87 ttactttaagttgtttattt-ttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtg 168  Q
    ||||||||||||   ||||| ||| ||||||||||||  |||||| |||||||||| |||||| || ||||||||||||||||    
T  15324992 ttactttaagtttggtatttgttaattgtgttgtcacggtgtcttaacattgcatttgacatttctggtgtcttgacatcgtg 15324910  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 44017774 - 44017739
Alignment:
Q  26 ctcaaaaatgtcttataattagggacggagatagta 61  Q
    |||||||||||||||||||||||||| |||||||||    
T  44017774 ctcaaaaatgtcttataattagggacagagatagta 44017739  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 38802462 - 38802530
Alignment:
Q  97 ttgtttatttttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatc 165  Q
    ||||| ||| |||||||||||||||  ||||||||||||| ||||||||||||| ||||||||||||||    
T  38802462 ttgttaattgttatttgtgttgtcaagatgtcttgacattacattcgacattcccagtgtcttgacatc 38802530  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 44021042 - 44021008
Alignment:
Q  27 tcaaaaatgtcttataattagggacggagatagta 61  Q
    ||||||||||||||||||||||||||||| |||||    
T  44021042 tcaaaaatgtcttataattagggacggaggtagta 44021008  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 27646977 - 27647043
Alignment:
Q  114 tgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtgtacgacatctgt 180  Q
    |||||| ||| ||||||||||||||||||||||||| |  | |||||||||||| ||||||||||||    
T  27646977 tgttgttacattgtcttgacattgcattcgacattcttgatatcttgacatcgtatacgacatctgt 27647043  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 12032455 - 12032534
Alignment:
Q  87 ttactttaagttgtttatttttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgt 167  Q
    ||||||||||||||||||| |||||||| |||| ||  |||| |||||||| ||||| ||||||| ||||| |||||||||    
T  12032455 ttactttaagttgtttattgttatttgtattgttacgttgtcctgacattggattcgtcattcct-gtgtcctgacatcgt 12032534  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 4650422 - 4650482
Alignment:
Q  108 tatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtg 168  Q
    ||||||||||||||| |||||||||||||| | |||||||| |  ||||||||||||||||    
T  4650422 tatttgtgttgtcacgatgtcttgacattgtactcgacatttcgcgtgtcttgacatcgtg 4650482  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 25123247 - 25123202
Alignment:
Q  131 gacattgcattcgacattcctagtgtcttgacatcgtgtacgacat 176  Q
    ||||||||||||||||||||| ||||| |||||||||  |||||||    
T  25123247 gacattgcattcgacattccttgtgtcatgacatcgtacacgacat 25123202  T

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Target: scaffold0070 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 3604 - 3543
Alignment:
Q  107 ttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtg 168  Q
    |||||||||||||||| ||||||||||||||   | ||||||||  ||||||||||||||||    
T  3604 ttatttgtgttgtcacgatgtcttgacattgtgctggacattccgcgtgtcttgacatcgtg 3543  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 18882386 - 18882351
Alignment:
Q  26 ctcaaaaatgtcttataattagggacggagatagta 61  Q
    |||||||| |||||||||||||||||||||||||||    
T  18882386 ctcaaaaaggtcttataattagggacggagatagta 18882351  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 39668621 - 39668701
Alignment:
Q  92 ttaagttgtttatttttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtgtacg 172  Q
    ||||||| |||||| ||||||||||||| || |||| | |  |||||||||||||||  |  |||||||||||||| ||||    
T  39668621 ttaagttatttattgttatttgtgttgttacgatgtatggttattgcattcgacatttttgatgtcttgacatcgtatacg 39668701  T

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