View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_low_6 (Length: 510)
Name: NF17737_low_6
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 176 - 493
Target Start/End: Original strand, 41669329 - 41669646
Alignment:
| Q |
176 |
ttgagttaggagcaaggctaaaatctaaatgagtgaaagctacttgtcactctaatataaaaataataatttaattttctatttatatggattctattta |
275 |
Q |
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| T |
41669329 |
ttgagttaggagcaaggctaaaatctaaatgagtgaaagctacttgtcactctaatataaaaataataatttaattttctatttatatggattctattta |
41669428 |
T |
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| Q |
276 |
tttgtaccaccgatgagatgagagttactaataatcaatcccttgactttattatgtacacacgctctgtcacagtatcctcaccatcctcatcttccat |
375 |
Q |
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| T |
41669429 |
tttgtaccaccgatgagatgagagttactaataatcaatcccttgactttattatgtacacacgctctgtcacagtatcctcaccatcctcatcttccat |
41669528 |
T |
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| Q |
376 |
aacaacaattaggatttcagaattctcacactttgctaaatgaccaaacattactgtcccatgaatctcaaaaatgccactaaacaccatacatgaagga |
475 |
Q |
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| T |
41669529 |
aacaacaattaggatttcagaattctcacactttgctaaatgaccaaacattactgtcccatgaatctcaaaaatgccaccaaacaccatacatgaagga |
41669628 |
T |
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| Q |
476 |
ccagtaagtaccaacatt |
493 |
Q |
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| T |
41669629 |
ccagtaagtaccaacatt |
41669646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 41669158 - 41669252
Alignment:
| Q |
14 |
caaaggacaaatcatttgagagaatatgagttcaattcctaacgaaacaatttttgattagatcgaaactcaaaattattcgtctactagagttg |
108 |
Q |
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|||||||| ||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41669158 |
caaaggacgaatcatttgagagaataagagttcaatttctaacgaaacaattcttgattagatcgaaactcaaaattattcgtctactagagttg |
41669252 |
T |
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