View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_low_67 (Length: 208)
Name: NF17737_low_67
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_67 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 5e-98; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 1047100 - 1046904
Alignment:
| Q |
1 |
ataggcgctccactaaatccaacgccgttccaaggaccactcctatgaatctcaactgatcctcttttcaaaacaatttctggattactacgaaggacaa |
100 |
Q |
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| T |
1047100 |
ataggcgctccactaaatccaactccattccaaggaccactcctatgaatttcaactgatcctcttttcaaaacaatttctggattactacgaaggacaa |
1047001 |
T |
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| Q |
101 |
taccccaagttaaatctcccgaagatggatcgtcccaatttttccaagaagttaatggacgattaagaccgatttttaggtcccatccaagcttcat |
197 |
Q |
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| T |
1047000 |
taccccaagttaaatctcccgaagatggatcgtcccaatttttccaagaagttaatggacgattaagaccaatttttaggtcccatccaagcttcat |
1046904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 1104124 - 1103934
Alignment:
| Q |
7 |
gctccactaaatccaacgccgttccaaggaccactcctatgaatctcaactgatcctcttttcaaaacaatttctggattactacgaaggacaatacccc |
106 |
Q |
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| T |
1104124 |
gctccactaaatccaactccattccaaggaccactcctatgaatctcaactgatccttttttcaatacaatttctggattactacgaaggacaatagccc |
1104025 |
T |
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| Q |
107 |
aagttaaatctcccgaagatggatcgtcccaatttttccaagaagttaatggacgattaagaccgatttttaggtcccatccaagcttcat |
197 |
Q |
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| T |
1104024 |
aagtaaaatctcccgaagacggatcatcccaatttttccatgaagttaattgacgattaagaccggtttttaggtcccatccaagcttcat |
1103934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 1071913 - 1071717
Alignment:
| Q |
1 |
ataggcgctccactaaatccaacgccgttccaaggaccactcctatgaatctcaactgatcctcttttcaaaacaatttctggattactacgaaggacaa |
100 |
Q |
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||||| ||||||||||||||||| || ||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||||||||| ||||||||| |
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| T |
1071913 |
ataggtgctccactaaatccaactccattccaaggaccactcctgtgaatttcaactgatccttttttcaatacaatttctggattactatgaaggacaa |
1071814 |
T |
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| Q |
101 |
taccccaagttaaatctcccgaagatggatcgtcccaatttttccaagaagttaatggacgattaagaccgatttttaggtcccatccaagcttcat |
197 |
Q |
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| T |
1071813 |
taccccatgttaaatctcccgatgatggatcgtcccaatttttccaagaagttaattgacgattaagaccggtttttaagtcccatccatgcttcat |
1071717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 1087568 - 1087378
Alignment:
| Q |
7 |
gctccactaaatccaacgccgttccaaggaccactcctatgaatctcaactgatcctcttttcaaaacaatttctggattactacgaaggacaatacccc |
106 |
Q |
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||||||||||||||||| || |||||||| ||| | ||||||||||||||||||||| ||||||| |||| |||||||||||||| |||||||||||||| |
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| T |
1087568 |
gctccactaaatccaactccattccaagggccagttctatgaatctcaactgatccttttttcaatacaacttctggattactactaaggacaatacccc |
1087469 |
T |
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| Q |
107 |
aagttaaatctcccgaagatggatcgtcccaatttttccaagaagttaatggacgattaagaccgatttttaggtcccatccaagcttcat |
197 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
1087468 |
aagttaaatctcccgaagatggatcgtcccaacttttccatgaagttaattgacgattaagaccggtttttaggtcccatccaagcttcat |
1087378 |
T |
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