View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_low_68 (Length: 207)
Name: NF17737_low_68
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_68 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 1625135 - 1624943
Alignment:
| Q |
1 |
ttgaaaacacaaattttcatctcaaccgtacacttgaaggcttaaacaatgcaagcaaaaattgttcaccgaatgatgtacaaacatggctcacaacttc |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1625135 |
ttgaaaacacaatttttcatctcaaccgtacacttgaaggcttaaacaatgcaagcaaaaattgttcaccgaatgatgtacaaacatggctcacaacttc |
1625036 |
T |
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| Q |
101 |
tctcacaaatattgaaacatgtaaaagtggagctttagaactcaatgctcaagatttcattttcattatgcaaaccaatgtcattgagatgat |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1625035 |
tctcacaaatattgaaacatgtaaaagtggagctttagaactcaatgctcaagatttcaatttcattatgcaaaccaatgtcattgagatgat |
1624943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 1608128 - 1607936
Alignment:
| Q |
1 |
ttgaaaacacaaattttcatctcaaccgtacacttgaaggcttaaacaatgcaagcaaaaattgttcaccgaatgatgtacaaacatggctcacaacttc |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||| |||||||| |
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| T |
1608128 |
ttgaaaacacaatttttcatctcaaccgtacacttgaaggcttaaacaatgctagcaaaaattgttcaccaaatgatgcacaaacatggctaacaacttc |
1608029 |
T |
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| Q |
101 |
tctcacaaatattgaaacatgtaaaagtggagctttagaactcaatgctcaagatttcattttcattatgcaaaccaatgtcattgagatgat |
193 |
Q |
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| T |
1608028 |
tctcacaaatattgaaacatgtaaaagtggagctttagaactcaatgctcaagatttcgatttcattatgcaaaccaatgtcactgaaatgat |
1607936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 1631618 - 1631426
Alignment:
| Q |
1 |
ttgaaaacacaaattttcatctcaaccgtacacttgaaggcttaaacaatgcaagcaaaaattgttcaccgaatgatgtacaaacatggctcacaacttc |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||| |||||||| |
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| T |
1631618 |
ttgaaaacacaatttttcatctcaaccgtacacttgaaggcttaaacaatgctagcaaaaattgttcaccaaatgatgcacaaacatggctaacaacttc |
1631519 |
T |
|
| Q |
101 |
tctcacaaatattgaaacatgtaaaagtggagctttagaactcaatgctcaagatttcattttcattatgcaaaccaatgtcattgagatgat |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |
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| T |
1631518 |
tctcacaaatattgaaacatgtaaaagtggagctttagaactcaatgctcaagatttcgatttcattatgcaaaccaatgtcactgaaatgat |
1631426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 10818925 - 10819116
Alignment:
| Q |
2 |
tgaaaacacaaattttcatctcaaccgtacacttgaaggcttaaacaatgcaagcaaaaattgttcaccgaatgatgtacaaacatggctcacaacttct |
101 |
Q |
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|||||| |||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
10818925 |
tgaaaatacaatttttcatctcaaccgcacacttgaaggcttaaacaatgcaagtaaaaattgttcaccaaatgatgcacaaacatggctcacaacttct |
10819024 |
T |
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| Q |
102 |
ctcacaaatattgaaacatgtaaaagtggagctttagaactcaatgctcaagatttcattttcattatgcaaaccaatgtcattgagatgat |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |
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| T |
10819025 |
ctcacaaatattgaaacatgtaaaagtggagctttagaactcaatgctcaagatttcaatttcattatgcaagccaatgtcactgagatgat |
10819116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 5e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 18786076 - 18785884
Alignment:
| Q |
1 |
ttgaaaacacaaattttcatctcaaccgtacacttgaaggcttaaacaatgcaagcaaaaattgttcaccgaatgatgtacaaacatggctcacaacttc |
100 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18786076 |
ttgaaaacacaatttttcatctcaaccatacacttgaaggcttaaacaatgcaagcaaaaattgttcaccgaatgatgtacaaacatggctcacaacttc |
18785977 |
T |
|
| Q |
101 |
tctcacaaatattgaaacatgtaaaagtggagctttagaactcaatgctcaagatttcattttcattatgcaaaccaatgtcattgagatgat |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18785976 |
tctcacaaatattgaaacatgtaaaagtggagctttagaactcaatgctcaagatttcaatttcattatgcaaaccaatgtcattgagatgat |
18785884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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