View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_low_69 (Length: 207)
Name: NF17737_low_69
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_69 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 10 - 189
Target Start/End: Original strand, 44753715 - 44753894
Alignment:
| Q |
10 |
atcaaaggcggaaagtaagcaaggggatggatcggaagcgacgaaatgtgaaatgaagtggaataggttttacgcctcttcaaaaagggaaaaaatgaga |
109 |
Q |
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| T |
44753715 |
atcaaaggcggaaagtaagcaagaggatggatcggaagcgacgaaatgtgaaatgaagtggaataggttttacgcctctttaaaaagggaaaaaacgaga |
44753814 |
T |
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| Q |
110 |
caacaattcctcgggaagacgcataaatttagctgatcgaagacacatgtggaaaatcgcgtgagatgacgacacgacac |
189 |
Q |
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| T |
44753815 |
caacaattcctcgggaagacgcataaatttagctgatcgaagacacatgtggaaaatcgcgtgagatgacgacacgacac |
44753894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 42 - 189
Target Start/End: Original strand, 20502768 - 20502915
Alignment:
| Q |
42 |
cggaagcgacgaaatgtgaaatgaag-tggaataggttttacgcctcttcaaaaagg-gaaaaaatgagacaacaattcctcgggaagacgcataaattt |
139 |
Q |
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|||||||||||||||| |||||||| | |||||||||||||||||||| ||||||| |||||||| |||| |||||||| ||||||||| || |||| |
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| T |
20502768 |
cggaagcgacgaaatg--aaatgaaggtagaataggttttacgcctctttaaaaaggagaaaaaataagacttcaattccttaggaagacgcgtagattt |
20502865 |
T |
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| Q |
140 |
agctgatcgaagacacatgtggaaaatcgcgtgagatgacgacacgacac |
189 |
Q |
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| T |
20502866 |
agtggatcgaagacacgtgtgaaagaccgtgcgagatgacgacacgacac |
20502915 |
T |
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