View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_low_7 (Length: 506)
Name: NF17737_low_7
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 11 - 484
Target Start/End: Original strand, 32730673 - 32731146
Alignment:
| Q |
11 |
cagagataccatcagtgccaacaggtttaacatcagcatcaaagattccaagtgtggaatcatacttgagaaggtgagaggcttgctttacacctccggt |
110 |
Q |
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| T |
32730673 |
cagagataccatcagtgccaacaggtttaacatcagcatcaaagattccaagtgtggaatcatacttgagaaggtgagaggcttgctttacacctccggt |
32730772 |
T |
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| Q |
111 |
gtcgttgatggcaatgacgtcaagaggcgagtccttacgaccatgccaacatctcaagaagttccgtccgatccttccaaatccgtttatggctacctta |
210 |
Q |
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| T |
32730773 |
gtcgttgatggcaatgacgtcaagaggcgagtccttacgaccatgccaacatctcaagaagttccgtccgatccttccaaatccgtttatggctacctta |
32730872 |
T |
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| Q |
211 |
atttttgcttccactacaacacctttcttggatcttccactgcttccaaccttaaaatgtacatacatagatagaaagattgatatatgaaaaattgtaa |
310 |
Q |
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| T |
32730873 |
atttttgcttccactacaacacctttcttggatcttccactgcttccaaccttaaaatgtacatacatagatagaaagattgatatatgaaaaattgtaa |
32730972 |
T |
|
| Q |
311 |
aacatgtctcttaatttgtttattcagttaatggtaatcatcaagtgtgnnnnnnngggatccggctaccctgcagtcagggattctccgcattcatgca |
410 |
Q |
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| T |
32730973 |
aacatgtctcttaatttgtttattcagttaatggtaatcaccaagtgtgtatttttgggatccggctaccctgcagtcagggattctccgcattcatgca |
32731072 |
T |
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| Q |
411 |
atagggacataagtggccgttctatcaagatcagatgatccatattcaaacttgatattttaaattataacgac |
484 |
Q |
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| T |
32731073 |
atagggacataagtggccgttctatcaacatcagatgatccatattcaaacttgatattttaaattataacgac |
32731146 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 445
Target Start/End: Original strand, 32998371 - 32998432
Alignment:
| Q |
383 |
gcagtcagggattctccgcattcatgcaatagggacataagtggccgttctatcaagatcaga |
445 |
Q |
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| T |
32998371 |
gcagttagggattctccgcattcatgcagttgggacatcagtagtcgttc-atcaagatcaga |
32998432 |
T |
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