View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_low_72 (Length: 203)
Name: NF17737_low_72
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_72 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 5402796 - 5402976
Alignment:
| Q |
1 |
aagaatgtgttcaattggagatcaaatgtgggaaatctacagcaatgaagaaattgtagacatggaaggtgtgcaccttgttacttacccaatgaggata |
100 |
Q |
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| T |
5402796 |
aagaatgtgttcaattggagatcaaatgtgggaaatctacagcaatgaagaaattgtagacatggaaggtgtgcaccttgttacttatccaatgagggta |
5402895 |
T |
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| Q |
101 |
acacaagaagggtatgtgaaagacttgagtaatggagtttattttcctgatacaaattctctagtgaaagggaagagatct |
181 |
Q |
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| T |
5402896 |
acacaagaagggtatgtgaaagacttgagtaatggagtttattttcctgatacaaattctctagtgaaagggaagagatct |
5402976 |
T |
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Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 43051317 - 43051135
Alignment:
| Q |
1 |
aagaatgtgttcaattggagatcaaatgtgggaaatctacagcaatgaagaaattgtagacatggaaggtgtgcaccttgttacttacccaatgaggata |
100 |
Q |
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||||||||| ||||| |||||| |||||||| ||||||| || | |||||||||||| |||||||| ||||||||||| || |||||||| |||| || |
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| T |
43051317 |
aagaatgtgctcaataggagataaaatgtggaaaatctatagtagtgaagaaattgtggacatggagggtgtgcacctagtaacttaccctatgatagta |
43051218 |
T |
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| Q |
101 |
acacaagaagggtatgtgaaagacttgagtaatgg---agtttattttcctgatacaaattctctagtgaaagggaagagatc |
180 |
Q |
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|||||| | || | |||| |||| | | |||||| | | |||||||||||||||| |||||||||||||||| ||||| |
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| T |
43051217 |
acacaaaatggatctgtggaagatctaactaatggtgaggatcattttcctgatacaaaagctctagtgaaagggaaaagatc |
43051135 |
T |
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