View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_low_75 (Length: 201)
Name: NF17737_low_75
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_75 |
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Alignment Details
Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 30819328 - 30819393
Alignment:
| Q |
114 |
ctcttccaaaagttgtataattgatttagcagcattggtagagaacagaccgtgattcctttcatt |
179 |
Q |
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| T |
30819328 |
ctcttccaaaagttgtataattgatttagcagcattggtagagaacagaccgtgattcctttcatt |
30819393 |
T |
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Target: chr3; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 30819476 - 30819541
Alignment:
| Q |
114 |
ctcttccaaaagttgtataattgatttagcagcattggtagagaacagaccgtgattcctttcatt |
179 |
Q |
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| T |
30819476 |
ctcttccaaaagctgtataattgatttagcagcattggtagagaacagaccgtgattcctttcatt |
30819541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 30819219 - 30819270
Alignment:
| Q |
5 |
gtcaactaatggtcaaacagatgagaggttattgccaacacatatgataacc |
56 |
Q |
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|||||||| ||| ||||||||| |||||||| |||||||||||||||||||| |
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| T |
30819219 |
gtcaactattggccaaacagataagaggttactgccaacacatatgataacc |
30819270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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