View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17737_low_9 (Length: 484)

Name: NF17737_low_9
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17737_low_9
NF17737_low_9
[»] chr8 (8 HSPs)
chr8 (1-484)||(15348472-15348955)
chr8 (393-479)||(12199922-12200008)
chr8 (393-479)||(12444350-12444436)
chr8 (377-468)||(4032277-4032368)
chr8 (389-479)||(12194916-12195006)
chr8 (389-479)||(12439344-12439434)
chr8 (34-83)||(12195317-12195366)
chr8 (34-83)||(12439745-12439794)
[»] chr4 (52 HSPs)
chr4 (139-479)||(48870157-48870497)
chr4 (139-479)||(48885843-48886183)
chr4 (344-479)||(7771019-7771154)
chr4 (353-478)||(48862857-48862985)
chr4 (351-479)||(7789704-7789832)
chr4 (344-469)||(7904657-7904782)
chr4 (344-475)||(33134151-33134285)
chr4 (378-478)||(45372419-45372519)
chr4 (344-479)||(48170914-48171052)
chr4 (353-479)||(48735649-48735778)
chr4 (351-478)||(45366553-45366683)
chr4 (361-479)||(48891024-48891143)
chr4 (375-477)||(48156786-48156888)
chr4 (353-479)||(7822584-7822710)
chr4 (344-470)||(7877344-7877470)
chr4 (154-463)||(48875477-48875786)
chr4 (344-479)||(7238048-7238183)
chr4 (356-478)||(48148022-48148147)
chr4 (344-472)||(7774157-7774285)
chr4 (349-469)||(49041471-49041591)
chr4 (353-479)||(7800252-7800378)
chr4 (351-479)||(50668658-50668786)
chr4 (344-478)||(33133653-33133790)
chr4 (345-479)||(7765236-7765370)
chr4 (357-479)||(7813095-7813217)
chr4 (345-479)||(7786058-7786192)
chr4 (377-479)||(7907940-7908042)
chr4 (344-469)||(37827322-37827447)
chr4 (58-178)||(48147756-48147876)
chr4 (359-478)||(45385131-45385249)
chr4 (353-435)||(48852316-48852401)
chr4 (138-240)||(50250909-50251011)
chr4 (409-477)||(48902567-48902635)
chr4 (376-463)||(49044589-49044676)
chr4 (50-187)||(48705390-48705527)
chr4 (130-227)||(48891279-48891376)
chr4 (45-110)||(48898694-48898759)
chr4 (3-99)||(48170546-48170642)
chr4 (383-474)||(48898342-48898436)
chr4 (203-290)||(45366402-45366489)
chr4 (165-300)||(45372215-45372350)
chr4 (138-227)||(48852530-48852619)
chr4 (377-442)||(50251169-50251234)
chr4 (356-476)||(47207552-47207672)
chr4 (58-106)||(48735421-48735469)
chr4 (154-237)||(37827129-37827212)
chr4 (52-195)||(45384901-45385044)
chr4 (29-76)||(48852690-48852737)
chr4 (3-82)||(48891430-48891509)
chr4 (29-91)||(7877738-7877800)
chr4 (413-463)||(49048996-49049046)
chr4 (154-230)||(48902802-48902878)
[»] chr5 (8 HSPs)
chr5 (353-476)||(29712806-29712929)
chr5 (363-478)||(29695768-29695883)
chr5 (344-476)||(29687669-29687801)
chr5 (413-476)||(42562728-42562791)
chr5 (45-231)||(29696075-29696261)
chr5 (378-479)||(1812040-1812141)
chr5 (152-230)||(29687975-29688053)
chr5 (414-463)||(178650-178699)
[»] chr1 (5 HSPs)
chr1 (353-475)||(24309796-24309918)
chr1 (353-478)||(24340030-24340155)
chr1 (353-470)||(24322086-24322203)
chr1 (364-479)||(24366770-24366885)
chr1 (353-475)||(24415456-24415577)
[»] scaffold0508 (1 HSPs)
scaffold0508 (357-478)||(11878-11999)
[»] chr3 (8 HSPs)
chr3 (353-479)||(11024874-11025000)
chr3 (353-479)||(11015862-11015988)
chr3 (42-240)||(47451930-47452128)
chr3 (353-479)||(47452247-47452370)
chr3 (386-479)||(11006332-11006425)
chr3 (410-446)||(955615-955651)
chr3 (47-99)||(11015544-11015596)
chr3 (168-240)||(11015668-11015740)
[»] chr6 (4 HSPs)
chr6 (361-455)||(21979989-21980083)
chr6 (371-479)||(21015391-21015499)
chr6 (133-228)||(21015672-21015767)
chr6 (410-470)||(14193139-14193199)
[»] chr7 (1 HSPs)
chr7 (372-479)||(48883397-48883505)


Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 15348955 - 15348472
Alignment:
Q  1 acgagaaaaactccaaacacgaataaatattatctaaggtgggatcataggacattaaaaccaccaagtaatcatcttttaattggtcatacccgaaact 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15348955 acgagaaaaactccaaacacgaataaatattatctaaggcgggatcataggacattaaaaccaccaagtaatcatcttttaattggtcatacccgaaact 15348856  T
Q  101 atagaaatattcagcgtctaatttcaaaccaataggggacaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15348855 atagaaatattcagcgtctaatttcaaaccaataggggacaaaggtacttttctgtgaaatccggtggatggattccatagatagaggattgaataatag 15348756  T
Q  201 ttcaaaagtacaaagcctctacatgaaccttcaatttcaaaatcagaatgattttgtggatgtagaaaatcaacattgagtgaagcagaagtagaatcat 300  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  15348755 ttcaaaagtacaaagcctctacatgaacctttaatttcaaaatcagaatgattttgtggatgtagaaaatcaacattgagtgaagcagaagtagaataat 15348656  T
Q  301 catcaagcgatgttgctaaatctatagaatgaggtagatgacctatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgc 400  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15348655 catcaagcgatgctgctaaatctatagaatgaggtagatgacctatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgc 15348556  T
Q  401 gaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctctctag 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15348555 gaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcaccggtaacctctctag 15348472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 393 - 479
Target Start/End: Complemental strand, 12200008 - 12199922
Alignment:
Q  393 gaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctc 479  Q
    |||||||| |||| |||||||||||||||||||||||| ||||||||||| |||||||||| || |||||| |||||||| ||||||    
T  12200008 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctc 12199922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 393 - 479
Target Start/End: Complemental strand, 12444436 - 12444350
Alignment:
Q  393 gaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctc 479  Q
    |||||||| |||| |||||||||||||||||||||||| ||||||||||| |||||||||| || |||||| |||||||| ||||||    
T  12444436 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctc 12444350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 377 - 468
Target Start/End: Original strand, 4032277 - 4032368
Alignment:
Q  377 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttca 468  Q
    ||||||||||||||| |||||||| |||| ||||||||| |||||||  |||||||| |||||||| || ||||||||||||||||| ||||    
T  4032277 ggtaatttgaaaatgcgaatttgcaaagtgaggatcagatataagagttaaccaagatttacaaacacacttgaaacgtataagagacttca 4032368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 389 - 479
Target Start/End: Complemental strand, 12195006 - 12194916
Alignment:
Q  389 atgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctc 479  Q
    |||||||||||| ||||  ||||||||||||||||| ||||| |||||||||| ||||||||||| || |||||| |||||||| ||||||    
T  12195006 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctc 12194916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 389 - 479
Target Start/End: Complemental strand, 12439434 - 12439344
Alignment:
Q  389 atgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctc 479  Q
    |||||||||||| ||||  ||||||||||||||||| ||||| |||||||||| ||||||||||| || |||||| |||||||| ||||||    
T  12439434 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctc 12439344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 12195366 - 12195317
Alignment:
Q  34 ctaaggtgggatcataggacattaaaaccaccaagtaatcatcttttaat 83  Q
    ||||||| ||||||||||||| |||||| ||||||||||||||| |||||    
T  12195366 ctaaggttggatcataggacaataaaacgaccaagtaatcatctcttaat 12195317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 12439794 - 12439745
Alignment:
Q  34 ctaaggtgggatcataggacattaaaaccaccaagtaatcatcttttaat 83  Q
    ||||||| ||||||||||||| |||||| ||||||||||||||| |||||    
T  12439794 ctaaggttggatcataggacaataaaacgaccaagtaatcatctcttaat 12439745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 139 - 479
Target Start/End: Complemental strand, 48870497 - 48870157
Alignment:
Q  139 acaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttc 238  Q
    ||||||||| || | |||||||||||||||||||||||||||| |||||| ||| |  | | | ||| | || |||||||||||||||||||| ||||||    
T  48870497 acaaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaacctttaatttc 48870398  T
Q  239 aaaatcagaatgattttgtggatgtagaaaatcaacattgagtgaagcagaagtagaatcatcatcaagcgatgttgctaaatctatagaatgaggtaga 338  Q
    ||||||| ||| |  ||  ||| | |||||||||| ||||| ||||| |||  ||||||||| | ||||||||| | |||||||||||||| ||||  |     
T  48870397 aaaatcataataagattcaggaagcagaaaatcaagattgactgaagaagagatagaatcataagcaagcgatgcttctaaatctatagaacgaggaggt 48870298  T
Q  339 tgacctatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttac 438  Q
     |    ||| ||| ||| |||||||||||||||||||| || |  ||||||||||||||||| ||    ||||| ||||||||| |||||||||||||||    
T  48870297 ggtgagatgaacagaatcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttac 48870198  T
Q  439 aaacgcatttgaaacgtataagagatttcaccggtaacctc 479  Q
    |||||||||||||||| |||||||| |||||||||| ||||    
T  48870197 aaacgcatttgaaacgaataagagaattcaccggtagcctc 48870157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 139 - 479
Target Start/End: Complemental strand, 48886183 - 48885843
Alignment:
Q  139 acaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttc 238  Q
    ||||||||| || | |||||||||||||||||||||||||||| |||||| ||| |  | | | ||| | || |||||||||||||||||||| ||||||    
T  48886183 acaaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaacctttaatttc 48886084  T
Q  239 aaaatcagaatgattttgtggatgtagaaaatcaacattgagtgaagcagaagtagaatcatcatcaagcgatgttgctaaatctatagaatgaggtaga 338  Q
    ||||||| ||| |  ||  ||| | |||||||||| ||||| ||||| |||  ||||||||| | ||||||||| | |||||||||||||| ||||  |     
T  48886083 aaaatcataataagattcaggaagcagaaaatcaagattgactgaagaagagatagaatcataagcaagcgatgcttctaaatctatagaacgaggaggt 48885984  T
Q  339 tgacctatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttac 438  Q
     |    ||| ||| ||| |||||||||||||||||||| || |  ||||||||||||||||| ||    ||||| ||||||||| |||||||||||||||    
T  48885983 ggtgagatgaacagaatcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttac 48885884  T
Q  439 aaacgcatttgaaacgtataagagatttcaccggtaacctc 479  Q
    |||||||||||||||| |||||||| |||||||||| ||||    
T  48885883 aaacgcatttgaaacgaataagagaattcaccggtagcctc 48885843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 344 - 479
Target Start/End: Complemental strand, 7771154 - 7771019
Alignment:
Q  344 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 443  Q
    |||||| |||| ||||| |||||||||||| | || || |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||    
T  7771154 tatgcataaaaatctacaagtgtgtgttgcagaggcaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacg 7771055  T
Q  444 catttgaaacgtataagagatttcaccggtaacctc 479  Q
    |||||||||| ||||||||| |||||||| ||||||    
T  7771054 catttgaaacatataagagacttcaccggcaacctc 7771019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 353 - 478
Target Start/End: Complemental strand, 48862985 - 48862857
Alignment:
Q  353 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaaacgcatttg 449  Q
    ||||||| | |||||||||||||| |||| |||||||||||||||||| |||| |||||||   ||||||||||||||||||||||| ||||||||||||    
T  48862985 aattctatgggtgtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttg 48862886  T
Q  450 aaacgtataagagatttcaccggtaacct 478  Q
    ||||| |||||||| ||||||||||||||    
T  48862885 aaacgaataagagacttcaccggtaacct 48862857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 351 - 479
Target Start/End: Complemental strand, 7789832 - 7789704
Alignment:
Q  351 aaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttga 450  Q
    |||| ||||| |||||||||||||| || || |||||||||||||||| | |||| |||||| ||||||| |||||||||||||||||||||||||||||    
T  7789832 aaaaatctacaagtgtgtgttgcggaggcaagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttga 7789733  T
Q  451 aacgtataagagatttcaccggtaacctc 479  Q
    ||| ||||||||| |||||||| ||||||    
T  7789732 aacatataagagacttcaccggcaacctc 7789704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 344 - 469
Target Start/End: Complemental strand, 7904782 - 7904657
Alignment:
Q  344 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 443  Q
    |||||||| ||||||| ||||||  | ||||||||| | |||||||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||     
T  7904782 tatgcacataattctaggagtgttagctgcggcggtgagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaaca 7904683  T
Q  444 catttgaaacgtataagagatttcac 469  Q
    |||||||||||||||||||| |||||    
T  7904682 catttgaaacgtataagagacttcac 7904657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 344 - 475
Target Start/End: Original strand, 33134151 - 33134285
Alignment:
Q  344 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaa 440  Q
    |||| ||| |||| ||| ||||||||||| |||||| |||||||||||||||||||| |||| |||||||   |||||||||||||| |||| |||||||    
T  33134151 tatgaacacaattttactagtgtgtgttgaggcggttatttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggcttacaa 33134250  T
Q  441 acgcatttgaaacgtataagagatttcaccggtaa 475  Q
    |||||||||||||| |||||||| |||||||||||    
T  33134251 acgcatttgaaacgaataagagacttcaccggtaa 33134285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 378 - 478
Target Start/End: Original strand, 45372419 - 45372519
Alignment:
Q  378 gtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacc 477  Q
    ||||||||||||||||||||||| || | |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||    
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacc 45372518  T
Q  478 t 478  Q
    |    
T  45372519 t 45372519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 344 - 479
Target Start/End: Original strand, 48170914 - 48171052
Alignment:
Q  344 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaa 440  Q
    |||| ||| |||| ||||||||||||||  |||||||||||||||||| |||||||| |||| |||||||   |||||||||| ||||||||||||||||    
T  48170914 tatgaacataattttacgagtgtgtgtttaggcggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaa 48171013  T
Q  441 acgcatttgaaacgtataagagatttcaccggtaacctc 479  Q
    || ||||||||||||| |||||| ||||||| |||||||    
T  48171014 acacatttgaaacgtagaagagacttcaccgataacctc 48171052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 353 - 479
Target Start/End: Original strand, 48735649 - 48735778
Alignment:
Q  353 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaaacgcatttg 449  Q
    ||||||||||||||| |||  ||||||||||| ||||||||||||||| || | || ||||   ||||||||||||||||||||||||||||| ||||||    
T  48735649 aattctacgagtgtgggttatggcggtaatttcaaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaaccaagacttacaaacacatttg 48735748  T
Q  450 aaacgtataagagatttcaccggtaacctc 479  Q
    ||||| |||||||| |||||||||||||||    
T  48735749 aaacgaataagagacttcaccggtaacctc 48735778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 351 - 478
Target Start/End: Original strand, 45366553 - 45366683
Alignment:
Q  351 aaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatc---agagataagagaaaaccaagacttacaaacgcatt 447  Q
    |||| ||||||||||||| ||||||||| || |||||||||||||||||| ||||  | |||   ||||||||||||||||||| ||||||||||||| |    
T  45366553 aaaactctacgagtgtgttttgcggcggaaagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcact 45366652  T
Q  448 tgaaacgtataagagatttcaccggtaacct 478  Q
    |||||||||||||||| ||||| ||||||||    
T  45366653 tgaaacgtataagagacttcactggtaacct 45366683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 361 - 479
Target Start/End: Complemental strand, 48891143 - 48891024
Alignment:
Q  361 gagtgtgtgttgcgg-cggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataa 459  Q
    |||||||||||| || |||||| ||||||||| |||||||| || | |||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  48891143 gagtgtgtgttgggggcggtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataa 48891044  T
Q  460 gagatttcaccggtaacctc 479  Q
    |||| || |||| |||||||    
T  48891043 gagactttaccgataacctc 48891024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 375 - 477
Target Start/End: Original strand, 48156786 - 48156888
Alignment:
Q  375 gcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggta 474  Q
    ||||||||||||||||| |||||||| || | || ||| |||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||    
T  48156786 gcggtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggta 48156885  T
Q  475 acc 477  Q
    |||    
T  48156886 acc 48156888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 353 - 479
Target Start/End: Complemental strand, 7822710 - 7822584
Alignment:
Q  353 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 452  Q
    |||||||||||| |||||||| | ||| | |||||| ||||||||||| ||||  ||||||||||||||||||||||| || |||||||| || ||||||    
T  7822710 aattctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaa 7822611  T
Q  453 cgtataagagatttcaccggtaacctc 479  Q
    ||||||||| | |||||||| ||||||    
T  7822610 cgtataagatacttcaccggcaacctc 7822584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 344 - 470
Target Start/End: Complemental strand, 7877470 - 7877344
Alignment:
Q  344 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 443  Q
    |||||||| ||||||| ||||||| |||| || ||| | |||||||||||||||||| || |  |||||||||||||||||||||||   |||||||| |    
T  7877470 tatgcacataattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatg 7877371  T
Q  444 catttgaaacgtataagagatttcacc 470  Q
    |||||||||||||||||||| ||||||    
T  7877370 catttgaaacgtataagagacttcacc 7877344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 154 - 463
Target Start/End: Complemental strand, 48875786 - 48875477
Alignment:
Q  154 tgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttcaaaatcagaatgatt 253  Q
    |||||||||||||||||||||||||||| |||||| ||||| || | | ||| |||| ||||||||| || ||||||| ||||||||||||| | | |      
T  48875786 tgtgaaatccggtggatggattccataggtagaggcttgaaaaacaatgcaacagtataaagcctctgcaagaacctttaatttcaaaatcatagttagg 48875687  T
Q  254 ttgtggatgtagaaaatcaacattgagtgaagcagaagtagaatcatcatcaagcgatgttgctaaatctatagaatgaggtagatg-acctatgcacaa 352  Q
    ||  ||| | |||||||||| |||||  | || |||| ||| ||||| | ||||||||| | | ||||||||||| ||||| || ||     ||| | |     
T  48875686 ttcaggaagaagaaaatcaagattgaccgcagaagaaatagtatcataaccaagcgatgcttccaaatctatagactgagg-aggtgttgagatgaatag 48875588  T
Q  353 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 452  Q
    |||||||||||   ||||||| ||||| | |||||||||||||||||  || |  || || ||||| ||||||||||||||||| |||||||||||||||    
T  48875587 aattctacgagacggtgttgccgcggtgagttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaaacgcatttgaaa 48875488  T
Q  453 cgtataagaga 463  Q
    || || |||||    
T  48875487 cgaattagaga 48875477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 344 - 479
Target Start/End: Original strand, 7238048 - 7238183
Alignment:
Q  344 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 443  Q
    |||||| ||||  |||||||| || ||||| | ||||  ||| |||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||     
T  7238048 tatgcataaaaacctacgagtatgcgttgcagaggtatgttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaaca 7238147  T
Q  444 catttgaaacgtataagagatttcaccggtaacctc 479  Q
    ||||||||||  |||||||| ||||| || ||||||    
T  7238148 catttgaaacagataagagacttcactggcaacctc 7238183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 356 - 478
Target Start/End: Original strand, 48148022 - 48148147
Alignment:
Q  356 tctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaaacgcatttgaaa 452  Q
    |||| |||||||| |||  ||||| | || |||||||||||||||||||| |||||||   |||||||||||||||||||||||||| || |||||||||    
T  48148022 tctatgagtgtgttttgaagcggtgagttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaa 48148121  T
Q  453 cgtataagagatttcaccggtaacct 478  Q
    || |||||||| ||||| ||||||||    
T  48148122 cgaataagagacttcactggtaacct 48148147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 344 - 472
Target Start/End: Original strand, 7774157 - 7774285
Alignment:
Q  344 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 443  Q
    |||||||| ||||||| ||||||| |||| || ||| | |||||||||||||||||| || |  |||||||||||||||||||||||   |||||||||     
T  7774157 tatgcacataattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaaca 7774256  T
Q  444 catttgaaacgtataagagatttcaccgg 472  Q
    ||||||||| | |||||||| ||||||||    
T  7774257 catttgaaatgaataagagacttcaccgg 7774285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 349 - 469
Target Start/End: Original strand, 49041471 - 49041591
Alignment:
Q  349 acaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcattt 448  Q
    |||||||||||||  |||| |||| || ||||| || |||||| |||||||| || |  ||||||||||||||||||||||||||||| |||||||||||    
T  49041471 acaaaattctacggttgtgggttgggggggtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcattt 49041570  T
Q  449 gaaacgtataagagatttcac 469  Q
    |||||  |||||||| |||||    
T  49041571 gaaacaaataagagacttcac 49041591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 353 - 479
Target Start/End: Complemental strand, 7800378 - 7800252
Alignment:
Q  353 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 452  Q
    |||||||||||| |||||||| | ||| | |||||| ||||||||||| |||   |||||||||| |||||||||||| || |||||||| || ||||||    
T  7800378 aattctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgcaaagcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaa 7800279  T
Q  453 cgtataagagatttcaccggtaacctc 479  Q
    ||||||||| | |||||||| ||||||    
T  7800278 cgtataagatacttcaccggcaacctc 7800252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 351 - 479
Target Start/End: Complemental strand, 50668786 - 50668658
Alignment:
Q  351 aaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttga 450  Q
    ||||||||||||||||||| | |||| |||| || |||||| ||||| || || |   |||| ||||| |||||||||||||| ||||||||||| ||||    
T  50668786 aaaattctacgagtgtgtgattcggcagtaagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttga 50668687  T
Q  451 aacgtataagagatttcaccggtaacctc 479  Q
    ||||||||||| ||||||| || ||||||    
T  50668686 aacgtataagatatttcacgggcaacctc 50668658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 344 - 478
Target Start/End: Complemental strand, 33133790 - 33133653
Alignment:
Q  344 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaa 440  Q
    |||| ||| |||| ||| ||||||||||| |||||| ||||||||||| |||||||| |||| | |||||   ||||||||||||||||||  |||||||    
T  33133790 tatgaacacaattttactagtgtgtgttgaggcggttatttgaaaatgcgaatttgcaaagtgaagatcattagagataagagaaaaccaaagcttacaa 33133691  T
Q  441 acgcatttgaaacgtataagagatttcaccggtaacct 478  Q
    | | |||||||||| |||||||| ||||  ||||||||    
T  33133690 atgaatttgaaacgaataagagacttcattggtaacct 33133653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 345 - 479
Target Start/End: Complemental strand, 7765370 - 7765236
Alignment:
Q  345 atgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgc 444  Q
    ||||| |||| ||||||||||||| ||||   | ||| ||| |||||||||||||| |||| |||||||||||||| |||||||||  ||||||||| ||    
T  7765370 atgcataaaaatctacgagtgtgttttgcatggttaagttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgc 7765271  T
Q  445 atttgaaacgtataagagatttcaccggtaacctc 479  Q
    | ||||||  ||  ||||| |||||||||||||||    
T  7765270 acttgaaaactaagagagacttcaccggtaacctc 7765236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 357 - 479
Target Start/End: Complemental strand, 7813217 - 7813095
Alignment:
Q  357 ctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgta 456  Q
    |||||||| |||||||| | ||| | |||||| ||||| ||||| ||||  || |||||||||||||||||||| || |||||||| || ||||||||||    
T  7813217 ctacgagtatgtgttgcagtggtgaattgaaattgtgactttgcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgta 7813118  T
Q  457 taagagatttcaccggtaacctc 479  Q
    ||||| | |||||||| ||||||    
T  7813117 taagatacttcaccggcaacctc 7813095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 479
Target Start/End: Complemental strand, 7786192 - 7786058
Alignment:
Q  345 atgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgc 444  Q
    ||||| |||| ||||||||||||| |||    | ||| ||| |||||||||||||| || | |||||||||||||| ||||| |||   |||||||||||    
T  7786192 atgcataaaaatctacgagtgtgttttgtaaggttaagttggaaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgc 7786093  T
Q  445 atttgaaacgtataagagatttcaccggtaacctc 479  Q
    |||||||   |||||||||||||||||| ||||||    
T  7786092 atttgaacaatataagagatttcaccggcaacctc 7786058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 377 - 479
Target Start/End: Complemental strand, 7908042 - 7907940
Alignment:
Q  377 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaac 476  Q
    ||||| |||||||||||||||||| || |  ||| ||||||||||||||||||| ||||||| |||  | ||||||||| ||||||| |||||||| |||    
T  7908042 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaac 7907943  T
Q  477 ctc 479  Q
    |||    
T  7907942 ctc 7907940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 344 - 469
Target Start/End: Original strand, 37827322 - 37827447
Alignment:
Q  344 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 443  Q
    |||| ||| ||||| |||||| |||| || ||| |||| |||||||||||||||||| ||||  |||| ||| |||||||  ||||| ||||||||||||    
T  37827322 tatgaacagaattcgacgagtttgtgctgtggccgtaagttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacg 37827421  T
Q  444 catttgaaacgtataagagatttcac 469  Q
    ||| | |||| ||||||||| |||||    
T  37827422 catgtaaaacttataagagacttcac 37827447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 178
Target Start/End: Original strand, 48147756 - 48147876
Alignment:
Q  58 aaaccaccaagtaatcatcttttaattggtcatacccgaaactatagaaatattcagcgtctaatttcaaaccaataggggacaaaggtacttttctgtg 157  Q
    |||||||||||||||||||| |||| ||||||||||| |||| |||| ||||| | || ||||| ||  |||||| ||| |||||||||| |||  |||     
T  48147756 aaaccaccaagtaatcatctgttaactggtcatacccaaaaccatagtaatatgctgcatctaaattggaaccaaaaggagacaaaggtattttcttgtt 48147855  T
Q  158 aaatccggtggatggattcca 178  Q
    |  ||||||||||||||||||    
T  48147856 agctccggtggatggattcca 48147876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 359 - 478
Target Start/End: Original strand, 45385131 - 45385249
Alignment:
Q  359 acgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtata 458  Q
    ||||| |||||||| ||||| || |||||| ||||||| ||| ||||  | ||| ||||  |||||||||||||||||||||||| |||||||||||||     
T  45385131 acgagggtgtgttgtggcggaaagttgaaa-tgtgaatatgcaaagtgggtatcggagacgagagaaaaccaagacttacaaacggatttgaaacgtatg 45385229  T
Q  459 agagatttcaccggtaacct 478  Q
    ||||| || || ||||||||    
T  45385230 agagacttaactggtaacct 45385249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 353 - 435
Target Start/End: Complemental strand, 48852401 - 48852316
Alignment:
Q  353 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaagga---tcagagataagagaaaaccaagact 435  Q
    |||||||||||||||||||| ||| ||||||| |||||| |||||||| |||| ||||   | |||||||||||||||||||||||    
T  48852401 aattctacgagtgtgtgttgaggcagtaatttcaaaatgcgaatttgcaaagtgaggattgtgagagataagagaaaaccaagact 48852316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 50250909 - 50251011
Alignment:
Q  138 gacaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaattt 237  Q
    |||||||||| || | ||||||  |||||||||||||||||||| |||||| ||||| || |||  |||| || ||| |||||||||||||||| |||||    
T  50250909 gacaaaggtatttgtatgtgaagcccggtggatggattccataggtagaggcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaattt 50251008  T
Q  238 caa 240  Q
    |||    
T  50251009 caa 50251011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 409 - 477
Target Start/End: Complemental strand, 48902635 - 48902567
Alignment:
Q  409 gatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacc 477  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||| || ||||| || ||||| ||||    
T  48902635 gatcagatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaacc 48902567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 463
Target Start/End: Original strand, 49044589 - 49044676
Alignment:
Q  376 cggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagaga 463  Q
    ||||||||| ||||||||||||||| ||||  |  | ||||||||||||||||||  |||||||||| || |||||||||| ||||||    
T  49044589 cggtaatttcaaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagaga 49044676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 187
Target Start/End: Original strand, 48705390 - 48705527
Alignment:
Q  50 ggacattaaaaccaccaagtaatcatcttttaattggtcatacccgaaactatagaaatattcagcgtctaatttcaaaccaataggggacaaaggtact 149  Q
    ||||||| |||| ||||||||||||||| || | || ||||| || |||| || ||||||||| || ||||| |   |||||| ||| |||||||||| |    
T  48705390 ggacattgaaacaaccaagtaatcatctgttgactgatcatatccaaaaccatggaaatattctgcatctaaatcggaaccaaaaggtgacaaaggtatt 48705489  T
Q  150 tttctgtgaaatccggtggatggattccatagatagag 187  Q
    | | |||||||||| || ||||||||||| || |||||    
T  48705490 tgtttgtgaaatccagtagatggattccacaggtagag 48705527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 48891376 - 48891279
Alignment:
Q  130 caataggggacaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaa 227  Q
    ||||||| |||||||||| || | |||||| ||| |||||||||||||||| ||||| |||||| | |   | |||||||||||| ||||||||||||    
T  48891376 caataggagacaaaggtatttgtttgtgaagtccagtggatggattccatacatagatgtttgagttagtatgcaaaagtacaaaccctctacatgaa 48891279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 48898759 - 48898694
Alignment:
Q  45 tcataggacattaaaaccaccaagtaatcatcttttaattggtcatacccgaaactatagaaatat 110  Q
    |||||||||| ||||||||| |||||||||||| |||| || |||||||| |||| ||||||||||    
T  48898759 tcataggacaataaaaccactaagtaatcatctgttaactgatcatacccaaaaccatagaaatat 48898694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 48170546 - 48170642
Alignment:
Q  3 gagaaaaactccaaacacgaataaatattatctaaggtgggatcataggacattaaaaccaccaagtaatcatcttttaattggtcatacccgaaac 99  Q
    |||||||| ||||||| |||||||  || | ||||||| |||||| |||||| | ||||||| |||||||||||| |||| || |||||||| ||||    
T  48170546 gagaaaaattccaaacgcgaataacaatgaactaaggttggatcacaggacactgaaaccactaagtaatcatctcttaactgatcatacccaaaac 48170642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 474
Target Start/End: Complemental strand, 48898436 - 48898342
Alignment:
Q  383 ttgaaaatgtgaatttgcgaagtaaggatc---agagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggta 474  Q
    |||||||||||||||||| ||||  | |||   ||||||||| || ||||||||||||||||| || ||||||||| ||||||| ||||| ||||    
T  48898436 ttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggta 48898342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 290
Target Start/End: Original strand, 45366402 - 45366489
Alignment:
Q  203 caaaagtacaaagcctctacatgaaccttcaatttcaaaatcagaatgattttgtggatgtagaaaatcaacattgagtgaagcagaa 290  Q
    |||||||| |||||||||||||||||||| ||||| || |||||||| |  ||  ||| | ||||||| || ||||||||||||||||    
T  45366402 caaaagtataaagcctctacatgaacctttaatttgaagatcagaataagattcgggaagcagaaaatgaagattgagtgaagcagaa 45366489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 300
Target Start/End: Original strand, 45372215 - 45372350
Alignment:
Q  165 gtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttcaaaatcagaatgattttgtggatgta 264  Q
    |||||||||||||||||||||| | |||||| |   | ||||| || ||| |||||||||||||||| |||||||| |||| |||||  ||| ||||  |    
T  45372215 gtggatggattccatagatagaaggttgaattaccatgcaaaaatataaaccctctacatgaacctttaatttcaagatcaaaatgagattggggatcca 45372314  T
Q  265 gaaaatcaacattgagtgaagcagaagtagaatcat 300  Q
     ||||  ||  || ||||||||||||| ||||||||    
T  45372315 caaaactaaggtttagtgaagcagaagcagaatcat 45372350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 48852619 - 48852530
Alignment:
Q  138 gacaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaa 227  Q
    |||||||||| || | |||||| |||||||||||||||||||||||| |  | |||| ||  || ||||| || ||||||||||||||||    
T  48852619 gacaaaggtatttgtttgtgaactccggtggatggattccatagataaatctctgaagaacggtgcaaaaatataaagcctctacatgaa 48852530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 442
Target Start/End: Original strand, 50251169 - 50251234
Alignment:
Q  377 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaac 442  Q
    ||||| |||||||||  |||||||  |||  |||||||||||||||||||||||||||||| ||||    
T  50251169 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaac 50251234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 476
Target Start/End: Complemental strand, 47207672 - 47207552
Alignment:
Q  356 tctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgt 455  Q
    |||| |||||||||||  || ||||| || |||||||||||| |  || |  || || ||||| |||||||| |||||||| ||||| |  || ||||||    
T  47207672 tctatgagtgtgtgttttggtggtaagttcaaaatgtgaattagaaaaatgtgggtcggagatgagagaaaatcaagacttccaaacactcttaaaacgt 47207573  T
Q  456 ataagagatttcaccggtaac 476  Q
    |||||||| ||||||||||||    
T  47207572 ataagagacttcaccggtaac 47207552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 48735421 - 48735469
Alignment:
Q  58 aaaccaccaagtaatcatcttttaattggtcatacccgaaactatagaa 106  Q
    |||||||||||||||||||| |||| ||||||||||| |||| ||||||    
T  48735421 aaaccaccaagtaatcatctgttaaatggtcatacccaaaaccatagaa 48735469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 37827129 - 37827212
Alignment:
Q  154 tgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaattt 237  Q
    |||||||||| ||||||||||||||||  |||| |||| || ||  || ||||| |||||| ||||||| |||||||| |||||    
T  37827129 tgtgaaatccagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacctgaacctttaattt 37827212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 195
Target Start/End: Original strand, 45384901 - 45385044
Alignment:
Q  52 acattaaaaccaccaagtaatcatcttttaattggtcatacccgaaactatagaaatattcagcgtctaatttcaaaccaataggggacaaaggtacttt 151  Q
    ||||| |||||||||| ||||||| | || | || |||||||| |||| ||||||||| || |  ||||| ||  |||||| ||| |||||||||| ||     
T  45384901 acattgaaaccaccaaataatcatttgttgactgatcatacccaaaaccatagaaataatctgtatctaaattagaaccaaaaggagacaaaggtatttc 45385000  T
Q  152 tctgtgaaatccggtggatggattccatagatagaggtttgaat 195  Q
    | |||||| ||   || |||||||||||||||| ||| ||||||    
T  45385001 tttgtgaactctaatgaatggattccatagataaaggcttgaat 45385044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 48852737 - 48852690
Alignment:
Q  29 attatctaaggtgggatcataggacattaaaaccaccaagtaatcatc 76  Q
    |||| ||||||| | |||||||||||||||||| ||||||||||||||    
T  48852737 attagctaaggttgtatcataggacattaaaactaccaagtaatcatc 48852690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 48891509 - 48891430
Alignment:
Q  3 gagaaaaactccaaacacgaataaatattatctaaggtgggatcataggacattaaaaccaccaagtaatcatcttttaa 82  Q
    |||||||||||||||| || || | ||  ||||||||| | ||||||||||| | |||||||||| ||||||||| ||||    
T  48891509 gagaaaaactccaaacgcggatgattaccatctaaggttgtatcataggacactgaaaccaccaactaatcatctcttaa 48891430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 7877800 - 7877738
Alignment:
Q  29 attatctaaggtgggatcataggacattaaaaccaccaagtaatcatcttttaattggtcata 91  Q
    |||| ||| ||| |||| |||||||| | |||||||||||||||||||| || ||||||||||    
T  7877800 attaactatggttggattataggacaatgaaaccaccaagtaatcatctcttgattggtcata 7877738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 463
Target Start/End: Original strand, 49048996 - 49049046
Alignment:
Q  413 agagataagagaaaaccaagacttacaaacgcatttgaaacgtataagaga 463  Q
    ||||||||||||||||||  |||||||||| || |||||||||| ||||||    
T  49048996 agagataagagaaaaccataacttacaaacacacttgaaacgtaaaagaga 49049046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 48902878 - 48902802
Alignment:
Q  154 tgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaacct 230  Q
    |||||||||| ||||| |||||||||| ||||| | |  || || ||| |||||||||||| ||||| |||||||||    
T  48902878 tgtgaaatccagtggaaggattccataaatagatggtgaaagaacagtgcaaaagtacaaaccctctgcatgaacct 48902802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 353 - 476
Target Start/End: Original strand, 29712806 - 29712929
Alignment:
Q  353 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 452  Q
    ||||||| ||| |||||||  |||||||| ||||||||||||||||||||| | ||  | ||||||||||||||||||  ||||||||||||| ||||||    
T  29712806 aattctaggagcgtgtgttttggcggtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaa 29712905  T
Q  453 cgtataagagatttcaccggtaac 476  Q
    || |||||||| ||||||||||||    
T  29712906 cgaataagagacttcaccggtaac 29712929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 363 - 478
Target Start/End: Complemental strand, 29695883 - 29695768
Alignment:
Q  363 gtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagag 462  Q
    |||||||| |||| ||||| |||||||||||||||||| |||| ||| | ||| |||||||| |||||  |||||||||||||||||||||| |||||||    
T  29695883 gtgtgtgtagcggtggtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatttgaaacgaataagag 29695784  T
Q  463 atttcaccggtaacct 478  Q
    | || || ||||||||    
T  29695783 acttgactggtaacct 29695768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 344 - 476
Target Start/End: Complemental strand, 29687801 - 29687669
Alignment:
Q  344 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 443  Q
    |||| ||| ||||||| |||||||||    |||||||| ||||||||| |||||||| |||| ||| | ||| || |||||||||||||||||||||||     
T  29687801 tatgaacagaattctaggagtgtgtgcattggcggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaaca 29687702  T
Q  444 catttgaaacgtataagagatttcaccggtaac 476  Q
    || ||||| ||||||||||| ||||| ||||||    
T  29687701 cacttgaagcgtataagagacttcactggtaac 29687669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 413 - 476
Target Start/End: Original strand, 42562728 - 42562791
Alignment:
Q  413 agagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaac 476  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  42562728 agagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtaac 42562791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 45 - 231
Target Start/End: Complemental strand, 29696261 - 29696075
Alignment:
Q  45 tcataggacattaaaaccaccaagtaatcatcttttaattggtcatacccgaaactatagaaatattcagcgtctaatttcaaaccaataggggacaaag 144  Q
    |||||||||||| ||| |||||||||||||||| || | | ||||||||| |||| ||||||||| |  || |||   ||  || |||| |  |  ||||    
T  29696261 tcataggacattgaaatcaccaagtaatcatctgttgactcgtcatacccaaaaccatagaaataatttgcatctggattggaatcaattgtagtaaaag 29696162  T
Q  145 gtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaacctt 231  Q
    ||| |  | ||||||||||||||||||||||||||| | ||||| |||| ||| |||||||||||| |||||||||||| |||||||    
T  29696161 gtattcgtttgtgaaatccggtggatggattccatatacagaggcttgagtaacagttcaaaagtataaagcctctacacgaacctt 29696075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 479
Target Start/End: Complemental strand, 1812141 - 1812040
Alignment:
Q  378 gtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacc 477  Q
    |||| |||||||||  ||||||| ||||  ||||  |||||||||||||||||  |||||||||| |||||| ||||||| ||| | ||||| |||||||    
T  1812141 gtaagttgaaaatgataatttgcaaagtggggatttgagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaacc 1812042  T
Q  478 tc 479  Q
    ||    
T  1812041 tc 1812040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 230
Target Start/End: Complemental strand, 29688053 - 29687975
Alignment:
Q  152 tctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaacct 230  Q
    |||||||| |||||||||||||||||||||||| ||| ||||||||  |    |||||| ||| |||||||||||||||    
T  29688053 tctgtgaactccggtggatggattccatagataaaggcttgaataaccggagcaaagtataaaacctctacatgaacct 29687975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 463
Target Start/End: Complemental strand, 178699 - 178650
Alignment:
Q  414 gagataagagaaaaccaagacttacaaacgcatttgaaacgtataagaga 463  Q
    ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagaga 178650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 353 - 475
Target Start/End: Complemental strand, 24309918 - 24309796
Alignment:
Q  353 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 452  Q
    ||||||||| ||||||||||  |  |||| |||||||||||||||||| |||| || |||||||||||||||||||||  ||||||||||| ||||||||    
T  24309918 aattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaa 24309819  T
Q  453 cgtataagagatttcaccggtaa 475  Q
    || |||||||| || ||||||||    
T  24309818 cgaataagagacttaaccggtaa 24309796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 353 - 478
Target Start/End: Complemental strand, 24340155 - 24340030
Alignment:
Q  353 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 452  Q
    ||||||| ||||||||||||| || |||| |||||| ||||||||||| |||| |  |||||||||||| |||||||| |||||||||||  ||||||||    
T  24340155 aattctaagagtgtgtgttgcagcagtaacttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttgaaa 24340056  T
Q  453 cgtataagagatttcaccggtaacct 478  Q
    || |||||||| || |||||||||||    
T  24340055 cgaataagagacttaaccggtaacct 24340030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 353 - 470
Target Start/End: Complemental strand, 24322203 - 24322086
Alignment:
Q  353 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 452  Q
    ||||| ||||||||||||||| || ||| |  |||| ||||||||||| ||   |||||  |||||||||||||||||||||||||||||||||||||||    
T  24322203 aattcgacgagtgtgtgttgcagcagtattcagaaactgtgaatttgcaaaacgaggatttgagataagagaaaaccaagacttacaaacgcatttgaaa 24322104  T
Q  453 cgtataagagatttcacc 470  Q
    || |||||||| ||||||    
T  24322103 cgaataagagacttcacc 24322086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 364 - 479
Target Start/End: Complemental strand, 24366885 - 24366770
Alignment:
Q  364 tgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagaga 463  Q
    |||||||||| || ||||| ||||| ||||||||||| ||||||||||  ||||||||||||||||| ||||| ||||| ||||||||||| || ||||     
T  24366885 tgtgtgttgcagcagtaatctgaaactgtgaatttgcaaagtaaggatttgagataagagaaaaccatgacttgcaaacacatttgaaacgaatcagagt 24366786  T
Q  464 tttcaccggtaacctc 479  Q
    ||  || |||||||||    
T  24366785 ttcaactggtaacctc 24366770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 353 - 475
Target Start/End: Complemental strand, 24415577 - 24415456
Alignment:
Q  353 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 452  Q
    ||||| ||||||||||||||| || ||||| ||||| ||||||||||| ||    ||||  || |||||||||||||||||||||| |||||||||||||    
T  24415577 aattcgacgagtgtgtgttgcagcagtaatctgaaactgtgaatttgcaaaact-ggatttgaaataagagaaaaccaagacttacgaacgcatttgaaa 24415479  T
Q  453 cgtataagagatttcaccggtaa 475  Q
    || |||||||| || ||||||||    
T  24415478 cgaataagagacttaaccggtaa 24415456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 357 - 478
Target Start/End: Complemental strand, 11999 - 11878
Alignment:
Q  357 ctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgta 456  Q
    ||||||||||||||||  |  |||| |||||||||||||||||| |||| |  ||||||||||||||||||||| |||||||||||| |||||||||| |    
T  11999 ctacgagtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacgga 11900  T
Q  457 taagagatttcaccggtaacct 478  Q
    ||||||| || | |||||||||    
T  11899 taagagacttaatcggtaacct 11878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 353 - 479
Target Start/End: Original strand, 11024874 - 11025000
Alignment:
Q  353 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 452  Q
    |||||||  |||||||||||| | || || || |||||| || ||||| |||| | |||||||||||||||  ||||| |||||||||||||||||||||    
T  11024874 aattctattagtgtgtgttgcaggggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaa 11024973  T
Q  453 cgtataagagatttcaccggtaacctc 479  Q
    ||||| ||||| |||||||||||||||    
T  11024974 cgtatgagagacttcaccggtaacctc 11025000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 353 - 479
Target Start/End: Original strand, 11015862 - 11015988
Alignment:
Q  353 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 452  Q
    |||||||  |||||||||||| | || || || |||||| || ||||| |||| | |||||||||||||||  ||| | |||||||||||||||||||||    
T  11015862 aattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaacaatgacttacaaacgcatttgaaa 11015961  T
Q  453 cgtataagagatttcaccggtaacctc 479  Q
    ||||| ||||| |||||||||||||||    
T  11015962 cgtatgagagacttcaccggtaacctc 11015988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 42 - 240
Target Start/End: Original strand, 47451930 - 47452128
Alignment:
Q  42 ggatcataggacattaaaaccaccaagtaatcatcttttaattggtcatacccgaaactatagaaatattcagcgtctaatttcaaaccaataggggaca 141  Q
    ||||||| ||||||||||||||| |||||||||||| |||| | ||||||||| || | ||| ||||| |  || ||||  ||  |||||| ||| | ||    
T  47451930 ggatcatcggacattaaaaccactaagtaatcatctgttaactcgtcatacccaaaccaataaaaataatttgcatctacattggaaccaaaaggaggca 47452029  T
Q  142 aaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttcaa 240  Q
    |||||| || | |||||| ||| ||||||||||||||||  |||| ||||||| || |  | ||||||| ||| |||||||||||||||| ||||||||    
T  47452030 aaggtatttgtttgtgaactccagtggatggattccatatgtagatgtttgaagaacaacttaaaagtataaaccctctacatgaacctttaatttcaa 47452128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 353 - 479
Target Start/End: Original strand, 47452247 - 47452370
Alignment:
Q  353 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 452  Q
    |||||||||||||||||   ||||||||| || ||||||||  ||||| |||  |||||||||||||||||||||||| |||||| ||| ||| |||||     
T  47452247 aattctacgagtgtgtg---cggcggtaagttcaaaatgtgtttttgcaaagagaggatcagagataagagaaaaccatgacttagaaatgcacttgaag 47452343  T
Q  453 cgtataagagatttcaccggtaacctc 479  Q
    |||| |||||| |||||||| ||||||    
T  47452344 cgtacaagagacttcaccggcaacctc 47452370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 386 - 479
Target Start/End: Original strand, 11006332 - 11006425
Alignment:
Q  386 aaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctc 479  Q
    |||||| || ||||| |||| |||||||||||||||||  ||||| ||||||||||| || |||||||||||||| || |||||||| ||||||    
T  11006332 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctc 11006425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 446
Target Start/End: Complemental strand, 955651 - 955615
Alignment:
Q  410 atcagagataagagaaaaccaagacttacaaacgcat 446  Q
    ||||||||||||||||  |||||||||||||||||||    
T  955651 atcagagataagagaattccaagacttacaaacgcat 955615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 11015544 - 11015596
Alignment:
Q  47 ataggacattaaaaccaccaagtaatcatcttttaattggtcatacccgaaac 99  Q
    |||||||| | | |||||||||||||||||| |||| ||||||||||| ||||    
T  11015544 ataggacactgataccaccaagtaatcatctcttaaatggtcatacccaaaac 11015596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 11015668 - 11015740
Alignment:
Q  168 gatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttcaa 240  Q
    |||||||||||||| |||| ||||||| || |  |||||| || ||| ||||||||||||| || ||||||||    
T  11015668 gatggattccataggtagatgtttgaagaacaagtcaaaactataaatcctctacatgaacttttaatttcaa 11015740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 455
Target Start/End: Original strand, 21979989 - 21980083
Alignment:
Q  361 gagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgt 455  Q
    |||||||||||||||||| ||  | |||||||||||| || ||||  |||| |||||| ||||||||||||||||||||||| || |||||||||    
T  21979989 gagtgtgtgttgcggcggcaagatcaaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacgt 21980083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 479
Target Start/End: Complemental strand, 21015499 - 21015391
Alignment:
Q  371 tgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcacc 470  Q
    |||||| ||||||| |||||||||| |||| ||||  |  | |||||||||||||||| |  |||||||||| || |||||||||| ||||||  | |||    
T  21015499 tgcggcagtaatttcaaaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgacc 21015400  T
Q  471 ggtaacctc 479  Q
    |||||||||    
T  21015399 ggtaacctc 21015391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 21015767 - 21015672
Alignment:
Q  133 taggggacaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaac 228  Q
    |||| |||||||||| || | |||||| ||  ||||||||||||||||| |||| |||||||| || || ||||| || ||| |||||||||||||    
T  21015767 taggagacaaaggtatttgtttgtgaactctagtggatggattccataggtagatgtttgaatcatggtgcaaaaatataaaccctctacatgaac 21015672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 470
Target Start/End: Original strand, 14193139 - 14193199
Alignment:
Q  410 atcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcacc 470  Q
    |||| |||||||||||| |||| |||||||||| |||||||||| ||  ||||| ||||||    
T  14193139 atcaaagataagagaaagccaaaacttacaaacacatttgaaacctaagagagacttcacc 14193199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 479
Target Start/End: Complemental strand, 48883505 - 48883397
Alignment:
Q  372 gcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgca---tttgaaacgtataagagatttca 468  Q
    ||||| |||| ||||||||| || ||||||||||  | || |||||  ||||||||||||| ||||||||| ||   ||||||||||| |||||| ||||    
T  48883505 gcggctgtaagttgaaaatgggattttgcgaagttggtatgagaga--agagaaaaccaaggcttacaaacacattttttgaaacgtaaaagagacttca 48883408  T
Q  469 ccggtaacctc 479  Q
    |  ||||||||    
T  48883407 catgtaacctc 48883397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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