View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17738_high_1 (Length: 923)

Name: NF17738_high_1
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17738_high_1
NF17738_high_1
[»] chr7 (27 HSPs)
chr7 (9-904)||(39622115-39623010)
chr7 (19-230)||(39547529-39547740)
chr7 (19-209)||(39365955-39366145)
chr7 (9-230)||(39564298-39564519)
chr7 (9-230)||(39538061-39538282)
chr7 (9-209)||(39353445-39353645)
chr7 (19-230)||(39338581-39338792)
chr7 (19-198)||(39589357-39589536)
chr7 (585-725)||(39589919-39590059)
chr7 (19-198)||(39575119-39575298)
chr7 (584-755)||(39539043-39539214)
chr7 (595-755)||(39348294-39348454)
chr7 (584-740)||(39575681-39575837)
chr7 (629-755)||(39565337-39565463)
chr7 (595-755)||(39365096-39365256)
chr7 (356-435)||(39589694-39589773)
chr7 (19-166)||(1084865-1085013)
chr7 (595-724)||(39548424-39548553)
chr7 (595-755)||(39336994-39337154)
chr7 (356-432)||(39337959-39338035)
chr7 (356-432)||(39564803-39564879)
chr7 (837-904)||(39575932-39575999)
chr7 (339-440)||(39365601-39365702)
chr7 (359-440)||(39547952-39548033)
chr7 (356-440)||(39538585-39538669)
chr7 (380-434)||(39575481-39575535)
chr7 (110-191)||(42133156-42133237)
[»] chr2 (3 HSPs)
chr2 (22-230)||(44223209-44223417)
chr2 (110-230)||(44211135-44211255)
chr2 (110-230)||(44234119-44234239)
[»] chr4 (2 HSPs)
chr4 (88-218)||(2877126-2877256)
chr4 (124-171)||(46451752-46451799)


Alignment Details
Target: chr7 (Bit Score: 872; Significance: 0; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 872; E-Value: 0
Query Start/End: Original strand, 9 - 904
Target Start/End: Original strand, 39622115 - 39623010
Alignment:
Q  9 agtagcatagggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtccca 108  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622115 agtaacataaggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtccca 39622214  T
Q  109 ccaatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctga 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622215 ccaatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctga 39622314  T
Q  209 atgaaccactgacaccattcaataggttcaacctttccccgacaactcgttgattcttcatttcctgcaagttcagagtaagcttatatataactatgaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39622315 atgaaccactgacaccattcaataggttcaacctttccccgacaactcgttgattcttcatttcctgcaagttcagagtgagcttatatataactatgaa 39622414  T
Q  309 aatttaacaaacacaggtgtttctcaatcattttattgtgtttataaattacctgtggcatatcaactgagtatgttacttcatcaaaggtgatacagtg 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39622415 aatttaacaaacacaggtgtttctcaatcattttattgtgtttataaattacctgtggcatatcaactgaatatgttacttcatcaaaggtgatacagtg 39622514  T
Q  409 tggttcaaaagaaagaatcattcctctcttcccataatgtttattttccgttacagattttttcttcctggatagcaattgaacggattcaacgacctga 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622515 tggttcaaaagaaagaatcattcctctcttcccataatgtttattttccgttacagattttttcttcctggatagcaattgaacggattcaacgacctga 39622614  T
Q  509 tgttctttaagtgctgcataatccatttctaatattagtacatactaagcttttatttattttgctaaggttggtgaaacttacggttcaagaaagtaag 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622615 tgttctttaagtgctgcataatccatttctaatattagtacatactaagcttttatttattttgctaaggttggtgaaacttacggttcaagaaagtaag 39622714  T
Q  609 agcaagaatgtaaccaatgatgaatagtaatgtgtatccaagcaaggcaccaaaaccgatccaataccagttggactgagtaaagaatccacgagatttc 708  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39622715 agcaagaatgtaaccaatgatgaatagtaatgtgtatccaatcaaggcaccaaaacctatccaataccagttggactgagtaaagaatccacgagatttc 39622814  T
Q  709 aaaacttgaactcctagtggttctgttgagttcggtacaacctttcagaaaaacacaaagatatccagacaagtgattaatttgtgtgataaagaggcac 808  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622815 aaaacttgaactcctagtggttctgttgagttcggtacaacctttcagaaaaacacaaagatatccagacaagtgattaatttgtgtgataaagaggcac 39622914  T
Q  809 ataaatgaagatattgatcagtgaataacatacatgtctccatgtcttcccttggaactcattattcaacaaggcattctgtccatacattgcagg 904  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622915 ataaatgaagatattgatcagtgaataacatacatgtctccatgtcttcccttggaactcattattcaacaaggcattctgtccatacattgcagg 39623010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 39547529 - 39547740
Alignment:
Q  19 ggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatc 118  Q
    ||||||||||||| | |||| |||||||||||  ||| |||||||||||| || |||||||||| ||||||||| ||||||||| |||||||||||||||    
T  39547529 ggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtatcttgcttctttggatagccagatattgtgatgttcccaccaatatatc 39547628  T
Q  119 ctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaatgaaccact 218  Q
    | |  |||||||| ||||  |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||||||| |  |||||    
T  39547629 caccagtttttctaccagaaagtacatccatcagagttgttttgcctgcaccagtcacacccatcagagcagtgagaacaccaggtctgaaagctccact 39547728  T
Q  219 gacaccattcaa 230  Q
     ||||| |||||    
T  39547729 tacacccttcaa 39547740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 39366145 - 39365955
Alignment:
Q  19 ggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatc 118  Q
    ||||||||||||| | |||| || ||||||||| ||| ||||||||||||||| |||||||||| ||||||||| ||||||||| |||||||||||||||    
T  39366145 ggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtttcttgcttctttggatagccagatattgtgatgttcccaccaatatatc 39366046  T
Q  119 ctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaa 209  Q
    | |  |||||||| ||||  || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||    
T  39366045 caccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagccgtgagaacacctggtctgaa 39365955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 39564298 - 39564519
Alignment:
Q  9 agtagcatagggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtccca 108  Q
    |||| |||| ||||| ||||||| |||||| |||||||| ||| ||| ||||||||||||||| |||||||||| | |||| |||||||||||| |||||    
T  39564298 agtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtgatgttccca 39564397  T
Q  109 ccaatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctga 208  Q
    ||||||||||||| |||||| || ||||  || ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| | |||||||    
T  39564398 ccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccattagagcagtgagaacaccaggtctga 39564497  T
Q  209 atgaaccactgacaccattcaa 230  Q
    | |  ||||| ||||| |||||    
T  39564498 aagctccacttacacccttcaa 39564519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 39538061 - 39538282
Alignment:
Q  9 agtagcatagggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtccca 108  Q
    |||| |||| ||||||||||||| | |||| |||||||||||  ||| |||||||||||| || |||||||||| ||||||||||||||||||| |||||    
T  39538061 agtaacataaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtatcttgcttctttggatagccagaaattgtgatgttccca 39538160  T
Q  109 ccaatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctga 208  Q
    ||||||||||| |  |||||||| ||||  || ||||||||||||||||||||||| ||||| || || ||||||||||| ||||||||| | |||||||    
T  39538161 ccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgcctgcacccgtgacgcccatcagagcagtgagaacacctggtctga 39538260  T
Q  209 atgaaccactgacaccattcaa 230  Q
    | |  ||||||| ||| |||||    
T  39538261 aagctccactgagacctttcaa 39538282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 39353645 - 39353445
Alignment:
Q  9 agtagcatagggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtccca 108  Q
    |||| |||| ||||||||||||| | |||| |||||||||||| ||| ||||||||||||||| ||||| |||| |||||| |||||||||||| |||||    
T  39353645 agtaacataaggagaatggatatcagtttgctcacagtatccagaaattcttgcaaaggtttcttgcttttttggatagccggaaattgtgatgttccca 39353546  T
Q  109 ccaatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctga 208  Q
    ||||||||||| | ||||||||| ||||  || |||||||| ||||||||||| ||||||||||| |  ||||||||||| ||||||||| | |||||||    
T  39353545 ccaatatatccaccggtttttctaccagaaagcacatccattagagttgtttttccagcaccagtgatgcccatcagagccgtgagaacacctggtctga 39353446  T
Q  209 a 209  Q
    |    
T  39353445 a 39353445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 39338792 - 39338581
Alignment:
Q  19 ggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatc 118  Q
    ||||||||||||| | |||| |||||||||||| ||| ||||||||||||||| |||||||||| | |||| |||||| ||||| |||||||||||||||    
T  39338792 ggagaatggatatcagtttgctcacagtatccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattttgatgttcccaccaatatatc 39338693  T
Q  119 ctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaatgaaccact 218  Q
    | |  |||||||| ||||  || |||||||||||||||||||| |||||||| || |  ||||||||||| ||||||||| | |||||||| |  |||||    
T  39338692 caccagtttttctaccagaaagcacatccatcagagttgttttcccagcaccggtgatgcccatcagagcggtgagaacacctggtctgaaagctccact 39338593  T
Q  219 gacaccattcaa 230  Q
     ||||| |||||    
T  39338592 tacacccttcaa 39338581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 39589357 - 39589536
Alignment:
Q  19 ggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatc 118  Q
    ||||| ||||||| |||||| |||||||||||| ||| ||||||||| ||||| |||||||| | ||| |||||||||||||||||||||||||||||||    
T  39589357 ggagagtggatatcattttgctcacagtatccagaaattcttgcaaatgtttcttgcttcttaggatatccagaaattgtgatggtcccaccaatatatc 39589456  T
Q  119 ctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaaca 198  Q
    | |  |||||||| ||||  || ||||||| || ||| ||||| |||||||| || || ||||| | ||| |||||||||    
T  39589457 caccagtttttctaccagaaagcacatccaacaaagtagtttttccagcacccgtgacgcccattaaagcagtgagaaca 39589536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 585 - 725
Target Start/End: Original strand, 39589919 - 39590059
Alignment:
Q  585 aaacttacggttcaagaaagtaagagcaagaatgtaaccaatgatgaatagtaatgtgtatccaagcaaggcaccaaaaccgatccaataccagttggac 684  Q
    ||||| |||||||||| |||  |||||||| | |||||||| | ||||||||||||||||||||| ||  || |||||||| |||||||||||||  |||    
T  39589919 aaactcacggttcaagtaagcgagagcaagtaggtaaccaaagttgaatagtaatgtgtatccaatcattgctccaaaacctatccaataccagtaagac 39590018  T
Q  685 tgagtaaagaatccacgagatttcaaaacttgaactcctag 725  Q
    ||||||||||| || ||||||||||||| || |||||||||    
T  39590019 tgagtaaagaaccctcgagatttcaaaatttcaactcctag 39590059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 39575119 - 39575298
Alignment:
Q  19 ggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatc 118  Q
    ||||| || |||| |||||| |||||||||||  ||| ||||||||||||||| ||||| || | ||  || |||| ||||||| |||||| ||||||||    
T  39575119 ggagagtgtatatcattttgctcacagtatccggaaattcttgcaaaggtttcttgctttttgggatgcccggaaactgtgatgttcccactaatatatc 39575218  T
Q  119 ctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaaca 198  Q
    | |   |||| || ||||| ||||||||||||| ||||||||||||||||||||| |||||||| || || |||||||||    
T  39575219 ccccacttttcctaccagcaagtacatccatcaaagttgttttgccagcaccagtgacacccataagtgcagtgagaaca 39575298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 584 - 755
Target Start/End: Original strand, 39539043 - 39539214
Alignment:
Q  584 gaaacttacggttcaagaaagtaagagcaagaatgtaaccaatgatgaatagtaatgtgtatccaagcaaggcaccaaaaccgatccaataccagttgga 683  Q
    |||||||||| ||||||||||| |||||||| || || |||| | |||| | |||||| ||||||| ||| ||||||| ||| ||||| |||||||  |     
T  39539043 gaaacttacgattcaagaaagtgagagcaaggatatatccaaagttgaagattaatgtatatccaatcaaagcaccaacacctatccagtaccagtatgg 39539142  T
Q  684 ctgagtaaagaatccacgagatttcaaaacttgaactcctagtggttctgttgagttcggtacaacctttca 755  Q
    || | ||||||||||  ||||||||||||||| ||||||||  ||||| |||||||| || | |||||||||    
T  39539143 ctcactaaagaatccgtgagatttcaaaacttcaactcctatcggttccgttgagttagggagaacctttca 39539214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 595 - 755
Target Start/End: Complemental strand, 39348454 - 39348294
Alignment:
Q  595 ttcaagaaagtaagagcaagaatgtaaccaatgatgaatagtaatgtgtatccaagcaaggcaccaaaaccgatccaataccagttggactgagtaaaga 694  Q
    ||||||||||| |||||||| || || |||| | |||| |||||||| ||||||| ||| ||||||| ||  ||||||||||| |  | || ||||||||    
T  39348454 ttcaagaaagtgagagcaaggatatatccaaagttgaaaagtaatgtatatccaatcaaagcaccaacacatatccaataccaatatgtctcagtaaaga 39348355  T
Q  695 atccacgagatttcaaaacttgaactcctagtggttctgttgagttcggtacaacctttca 755  Q
    | |  |||||||||||||||| ||||||||||| ||| |||||||| || | |||||||||    
T  39348354 aactgcgagatttcaaaacttcaactcctagtgattcggttgagttaggaagaacctttca 39348294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 584 - 740
Target Start/End: Original strand, 39575681 - 39575837
Alignment:
Q  584 gaaacttacggttcaagaaagtaagagcaagaatgtaaccaatgatgaatagtaatgtgtatccaagcaaggcaccaaaaccgatccaataccagttgga 683  Q
    |||||| ||| || ||| |||| ||||||||||||||||| | | |||| |||||||| ||||| ||||| ||  ||||||  |||||||||||||  ||    
T  39575681 gaaactcacgattgaagtaagttagagcaagaatgtaacccaagttgaacagtaatgtatatccgagcaatgccgcaaaacatatccaataccagtatga 39575780  T
Q  684 ctgagtaaagaatccacgagatttcaaaacttgaactcctagtggttctgttgagtt 740  Q
    ||| |||||||| |||||||||| |||||| | ||||||||| ||||  ||||||||    
T  39575781 ctgtgtaaagaacccacgagattccaaaacatcaactcctagcggtttagttgagtt 39575837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 629 - 755
Target Start/End: Original strand, 39565337 - 39565463
Alignment:
Q  629 tgaatagtaatgtgtatccaagcaaggcaccaaaaccgatccaataccagttggactgagtaaagaatccacgagatttcaaaacttgaactcctagtgg 728  Q
    |||| |||||||| ||||||| ||| ||||||| ||| ||||| |||||||  |||| ||| |||||||| |||||||||||||||| ||||||||| ||    
T  39565337 tgaaaagtaatgtatatccaatcaaagcaccaacacctatccagtaccagtatgactcagtgaagaatccgcgagatttcaaaacttcaactcctagcgg 39565436  T
Q  729 ttctgttgagttcggtacaacctttca 755  Q
     || |||||||| || | |||||||||    
T  39565437 ctcagttgagttaggcagaacctttca 39565463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 595 - 755
Target Start/End: Complemental strand, 39365256 - 39365096
Alignment:
Q  595 ttcaagaaagtaagagcaagaatgtaaccaatgatgaatagtaatgtgtatccaagcaaggcaccaaaaccgatccaataccagttggactgagtaaaga 694  Q
    ||||||||||| |||||||| || || |||| | |||| |||||||| ||||||| ||| ||||||| ||  ||||||||||| |  | || ||||||||    
T  39365256 ttcaagaaagtgagagcaaggatatatccaaagttgaaaagtaatgtatatccaatcaaagcaccaacacatatccaataccaatatgtctcagtaaaga 39365157  T
Q  695 atccacgagatttcaaaacttgaactcctagtggttctgttgagttcggtacaacctttca 755  Q
    | |  |||||||||||||||| ||||||||||| | | |||||||| || | |||||||||    
T  39365156 aactgcgagatttcaaaacttcaactcctagtgatccggttgagttaggaagaacctttca 39365096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 356 - 435
Target Start/End: Original strand, 39589694 - 39589773
Alignment:
Q  356 attacctgtggcatatcaactgagtatgttacttcatcaaaggtgatacagtgtggttcaaaagaaagaatcattcctct 435  Q
    |||||||||||||| || || || |||||||||||||||||||||| ||| ||||||||||||| ||||| |||||||||    
T  39589694 attacctgtggcatgtctacagaatatgttacttcatcaaaggtgacacaatgtggttcaaaaggaagaaccattcctct 39589773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 1084865 - 1085013
Alignment:
Q  19 ggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgctt--ctttgaatagccagaaattgtgatggtcccaccaatata 116  Q
    |||||||||||||   |||| |||||||||||| ||| ||||| ||| ||||| |||||  || || ||||||||||||| ||||| |||||||||||||    
T  1084865 ggagaatggatatctatttgctcacagtatccagaaattcttgtaaatgtttcttgcttttctatggatagccagaaattatgatgttcccaccaatata 1084964  T
Q  117 tcctctggtttttcttccagctagtacatccatcagagttgttttgccag 166  Q
    |||    |||||||| ||||  || |||||||||| ||||||||||||||    
T  1084965 tccatcagtttttctaccag-aagcacatccatcaaagttgttttgccag 1085013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 595 - 724
Target Start/End: Original strand, 39548424 - 39548553
Alignment:
Q  595 ttcaagaaagtaagagcaagaatgtaaccaatgatgaatagtaatgtgtatccaagcaaggcaccaaaaccgatccaataccagttggactgagtaaaga 694  Q
    ||||||||||| || ||||| || || |||| | |||| |||||||| ||||||| ||| ||||||| ||| ||||| |||||||  |||| ||| |||     
T  39548424 ttcaagaaagtgagggcaaggatatagccaaagttgaaaagtaatgtatatccaatcaaagcaccaacacctatccagtaccagtatgactcagtgaagt 39548523  T
Q  695 atccacgagatttcaaaacttgaactccta 724  Q
    |||| |||||||||||||||| ||||||||    
T  39548524 atccgcgagatttcaaaacttcaactccta 39548553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 595 - 755
Target Start/End: Complemental strand, 39337154 - 39336994
Alignment:
Q  595 ttcaagaaagtaagagcaagaatgtaaccaatgatgaatagtaatgtgtatccaagcaaggcaccaaaaccgatccaataccagttggactgagtaaaga 694  Q
    ||||||||||| || ||||| || || |||| | |||| |||||||| ||||||| ||| ||||||| ||  ||||| ||||| |  | || ||||||||    
T  39337154 ttcaagaaagtgagggcaaggatatatccaaagttgaaaagtaatgtatatccaatcaaagcaccaacacatatccagtaccaatatgtctcagtaaaga 39337055  T
Q  695 atccacgagatttcaaaacttgaactcctagtggttctgttgagttcggtacaacctttca 755  Q
    | |  |||||||||||||||| |||||| |||| ||| |||||||| || | |||||||||    
T  39337054 aactgcgagatttcaaaacttcaactccaagtgattcggttgagttaggaagaacctttca 39336994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 356 - 432
Target Start/End: Complemental strand, 39338035 - 39337959
Alignment:
Q  356 attacctgtggcatatcaactgagtatgttacttcatcaaaggtgatacagtgtggttcaaaagaaagaatcattcc 432  Q
    |||||||||||||| || || || ||||| |||||||||||||| ||| | ||||||||||||| ||||| ||||||    
T  39338035 attacctgtggcatgtctacagaatatgtaacttcatcaaaggttatagaatgtggttcaaaaggaagaaccattcc 39337959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 356 - 432
Target Start/End: Original strand, 39564803 - 39564879
Alignment:
Q  356 attacctgtggcatatcaactgagtatgttacttcatcaaaggtgatacagtgtggttcaaaagaaagaatcattcc 432  Q
    |||||||||||||| || || || ||||| |||||||||||||| ||| | ||||||||||||| ||||| ||||||    
T  39564803 attacctgtggcatgtctacggaatatgtaacttcatcaaaggttatagaatgtggttcaaaaggaagaaccattcc 39564879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 837 - 904
Target Start/End: Original strand, 39575932 - 39575999
Alignment:
Q  837 catacatgtctccatgtcttcccttggaactcattattcaacaaggcattctgtccatacattgcagg 904  Q
    |||||||||||||||||||| ||| ||||||| |||||||  ||| |||||||| |||||||| ||||    
T  39575932 catacatgtctccatgtctttcctaggaactcgttattcactaagccattctgtgcatacattacagg 39575999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 339 - 440
Target Start/End: Complemental strand, 39365702 - 39365601
Alignment:
Q  339 ttttattgtgtttataaattacctgtggcatatcaactgagtatgttacttcatcaaaggtgatacagtgtggttcaaaagaaagaatcattcctctctt 438  Q
    |||||||  |||| || |||||||||||||| || || || ||||  |||||||||||||||||  | ||||||||||| | ||||| ||||||||| ||    
T  39365702 ttttattcggtttgtagattacctgtggcatgtctacagaatatgaaacttcatcaaaggtgattgaatgtggttcaaatggaagaaccattcctctttt 39365603  T
Q  439 cc 440  Q
    ||    
T  39365602 cc 39365601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 359 - 440
Target Start/End: Original strand, 39547952 - 39548033
Alignment:
Q  359 acctgtggcatatcaactgagtatgttacttcatcaaaggtgatacagtgtggttcaaaagaaagaatcattcctctcttcc 440  Q
    ||||||||||| || || || ||||| |||||||||||||||||  | |||||||||||||  |||| ||||||||| ||||    
T  39547952 acctgtggcatgtctacagaatatgtaacttcatcaaaggtgattgaatgtggttcaaaagggagaaccattcctcttttcc 39548033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 356 - 440
Target Start/End: Original strand, 39538585 - 39538669
Alignment:
Q  356 attacctgtggcatatcaactgagtatgttacttcatcaaaggtgatacagtgtggttcaaaagaaagaatcattcctctcttcc 440  Q
    |||||||||||||| || || || ||||  |||||||||||||||||  | ||||||||||| | ||||| ||||||||| ||||    
T  39538585 attacctgtggcatgtctacagaatatgaaacttcatcaaaggtgattgaatgtggttcaaatggaagaaccattcctcttttcc 39538669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 380 - 434
Target Start/End: Original strand, 39575481 - 39575535
Alignment:
Q  380 tatgttacttcatcaaaggtgatacagtgtggttcaaaagaaagaatcattcctc 434  Q
    |||||||||||||||||||| ||| | ||| ||||||||| ||||| ||||||||    
T  39575481 tatgttacttcatcaaaggttatagaatgttgttcaaaaggaagaaccattcctc 39575535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 42133156 - 42133237
Alignment:
Q  110 caatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgt 191  Q
    |||||||||| |  ||||||||||| |||| ||||||||| || ||||| || ||||||||| | |||||||| || |||||    
T  42133156 caatatatccacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacccataagtgctgt 42133237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 6e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 44223209 - 44223417
Alignment:
Q  22 gaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatcctc 121  Q
    |||||||||| ||| || |||||||| ||| ||| ||| ||||| ||||| ||||| || |  || |||||||   |||||   ||| |||||||||| |    
T  44223209 gaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccagaaaccttgatgtctccatcaatatatccac 44223308  T
Q  122 tggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaatgaaccactgac 221  Q
      ||||| || ||||| || |||||||||||||||||||| ||||| ||| | |||||||||| ||||||||||||| | || ||||||| |||||| ||    
T  44223309 ctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacaccgggcctgaatgcaccactaac 44223408  T
Q  222 accattcaa 230  Q
    ||| |||||    
T  44223409 acccttcaa 44223417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 44211135 - 44211255
Alignment:
Q  110 caatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaa 209  Q
    |||||||||| |  ||||| || ||||| || |||||||||||||||||||| ||||| ||| | |||||||||| ||||||||||||| | || |||||    
T  44211135 caatatatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacaccgggcctgaa 44211234  T
Q  210 tgaaccactgacaccattcaa 230  Q
    || ||| || ||||| |||||    
T  44211235 tgcaccgctaacacccttcaa 44211255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 44234119 - 44234239
Alignment:
Q  110 caatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaa 209  Q
    |||||||||| |  ||||| || ||||| || |||||||||||||||||||| ||||| ||| | |||||||||| ||| || || ||| | || |||||    
T  44234119 caatatatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagccgtaagtacaccaggcctgaa 44234218  T
Q  210 tgaaccactgacaccattcaa 230  Q
    ||  ||||| ||||| |||||    
T  44234219 tgcgccactaacacccttcaa 44234239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 218
Target Start/End: Complemental strand, 2877256 - 2877126
Alignment:
Q  88 ccagaaattgtgatggtcccaccaatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagag 187  Q
    ||||||||| | ||| ||||| ||||||| || || ||||| || ||||| | ||||||||||| ||| ||||| ||||| ||| | |||||||||| ||    
T  2877256 ccagaaatttttatgctcccatcaatataaccactagttttcctaccagccaatacatccatcaaagtagttttaccagctccactaacacccatcaaag 2877157  T
Q  188 ctgtgagaacagccggtctgaatgaaccact 218  Q
    ||||||||||| | ||||| |||| ||||||    
T  2877156 ctgtgagaacaccaggtctaaatgcaccact 2877126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 46451799 - 46451752
Alignment:
Q  124 gtttttcttccagctagtacatccatcagagttgttttgccagcacca 171  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||||||    
T  46451799 gtttttcttccagctaatacatccatcagagtggttttcccagcacca 46451752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University