View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17738_high_10 (Length: 417)

Name: NF17738_high_10
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17738_high_10
NF17738_high_10
[»] chr1 (3 HSPs)
chr1 (14-399)||(5960157-5960541)
chr1 (28-230)||(10549497-10549695)
chr1 (14-155)||(16766069-16766209)
[»] chr5 (6 HSPs)
chr5 (18-228)||(31043986-31044194)
chr5 (71-223)||(20234852-20235002)
chr5 (88-228)||(31059330-31059468)
chr5 (78-218)||(25762004-25762142)
chr5 (14-155)||(31048712-31048853)
chr5 (76-150)||(34832211-34832285)
[»] chr2 (4 HSPs)
chr2 (117-228)||(10925990-10926099)
chr2 (71-155)||(17310783-17310867)
chr2 (71-155)||(29810178-29810262)
chr2 (71-153)||(30213750-30213832)
[»] chr3 (3 HSPs)
chr3 (167-229)||(25478885-25478947)
chr3 (77-150)||(48094969-48095042)
chr3 (229-277)||(25478816-25478864)
[»] chr7 (2 HSPs)
chr7 (71-155)||(19217401-19217485)
chr7 (71-153)||(41255749-41255831)
[»] chr8 (2 HSPs)
chr8 (76-155)||(23255018-23255097)
chr8 (170-218)||(756290-756338)


Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 14 - 399
Target Start/End: Original strand, 5960157 - 5960541
Alignment:
Q  14 atatcaagaaacgctttgcattatctcgcagatgaggctaatcgagcagttggtgtcggtatggataaatcaaggtgtggttgtttgaatttgatcactt 113  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5960157 atatcaagaaacgctttgcattatctcgcagatgaggctgatcgagcagttggtgtcggtatggataaatcaaggtgtggttgtttgaatttgatcactt 5960256  T
Q  114 tcagattgccatgtgcgtgtgcgattgcattgaagatcaagagcnnnnnnnncccatccgtttggataaaatccacactcactgaaagaggttgaagttc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  5960257 tcagattgccatgtgcgtgtgcgattgcattgaagatcaagagcaaaaaac-cccatccgtttggataaaatccacactcactaaaagaggttgaggttc 5960355  T
Q  214 gagtatgagggtgatatctctctgttactagaataggatttgcttcaggtattttctataaaaattaccggttgcaagtgtcactttgtctctaaaaagt 313  Q
    || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5960356 gaatatgagggtgatatctctctgttaccagaataggatttgcttcaggtattttctataaaaattaccggttgcaagtgtcactttgtctctaaaaagt 5960455  T
Q  314 tcacttgtccatcctctcgaaaagtctttggctttcccagacccgttaaagtcatcactttacattctatttaaccccctcatcgt 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5960456 tcacttgtccatcctctcgaaaagtctttggctttcccagacccgttaaagtcatcactttacattctatttaaccccctcatcgt 5960541  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 28 - 230
Target Start/End: Original strand, 10549497 - 10549695
Alignment:
Q  28 tttgcattatctcgcagatgaggctaatcgagcagttggtgtcggtatggataaatcaaggtgtggttgtttgaatttgatcactttcagattgccatgt 127  Q
    |||||||||||||| ||| || ||| || ||||||||||  | |||| ||||||||| |||||  ||||||||| || |||||||| | |||||||||||    
T  10549497 tttgcattatctcgtagacgatgctgattgagcagttggacttggtacggataaatccaggtg--gttgtttgagttcgatcacttacggattgccatgt 10549594  T
Q  128 gcgtgtgcgattgcattgaagatcaagagcnnnnnnnncccatccgtttggataaaatccacactcactgaaagaggttgaagttcgagtatgagggtga 227  Q
    | |||||||||||||||||||||||||| |        ||||||||||||||| |||||||||||||||| |||| ||||| ||||||||||||||||||    
T  10549595 gtgtgtgcgattgcattgaagatcaagaac--aaaatccccatccgtttggatgaaatccacactcactggaagatgttgaggttcgagtatgagggtga 10549692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 155
Target Start/End: Complemental strand, 16766209 - 16766069
Alignment:
Q  14 atatcaagaaacgctttgcattatctcgcagatgaggctaatcgagcagttggtgtcggtatggataaatcaaggtgtggttgtttgaatttgatcactt 113  Q
    ||||||||||| | |||||||||| ||||||| |||||  |||||||| | | | |||| | ||||||||| |  | ||||||||||| |  ||||||||    
T  16766209 atatcaagaaaagttttgcattatatcgcagacgaggccgatcgagcactcgatatcggaacggataaatccaaatttggttgtttgagtcagatcactt 16766110  T
Q  114 tcagattgccatgtgcgtgtgcgattgcattgaagatcaaga 155  Q
    || ||||| | |||||||| | ||||||||||||||||||||    
T  16766109 tcggattgtcgtgtgcgtg-gtgattgcattgaagatcaaga 16766069  T

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Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 31044194 - 31043986
Alignment:
Q  18 caagaaacgctttgcattatctcgcagatgaggctaatcgagcagttggtgtcggtatggataaatcaaggtgtggttgtttgaatttgatcactttcag 117  Q
    |||| |||||||||||||||||||||   |||| | |||||| |||||||    ||| ||||||||| | |||||||||||| | ||| ||| ||| |||    
T  31044194 caaggaacgctttgcattatctcgcaatcgaggttgatcgagtagttggttgtagtacggataaatccaagtgtggttgtttaattttcatcgcttacag 31044095  T
Q  118 attgccatgtgcgtgtgcgattgcattgaagatcaagagcnnnnnnnncccatccgtttggataaaatccacactcactgaaagaggttgaagttcgagt 217  Q
    ||| |||||||||||| |||||||| |||||||||||| |        |||||  |||||||| | |||||||||||||  | |||||||||||||||||    
T  31044094 atttccatgtgcgtgtacgattgcaatgaagatcaagaac--aacacccccatttgtttggatgacatccacactcactagatgaggttgaagttcgagt 31043997  T
Q  218 atgagggtgat 228  Q
    | |||||||||    
T  31043996 aagagggtgat 31043986  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 223
Target Start/End: Complemental strand, 20235002 - 20234852
Alignment:
Q  71 ggtatggataaatcaaggtgtggttgtttgaatttgatcactttcagattgccatgtgcgtgtgcgattgcattgaagatcaagagcnnnnnnnncccat 170  Q
    |||| |||||||||||  ||||||||||||| ||||||||||| | | || || |||||||||  |||||  ||||||||||||| |         ||||    
T  20235002 ggtacggataaatcaaaatgtggttgtttgagtttgatcacttacgggttaccgtgtgcgtgtatgattggtttgaagatcaagaacggaacca--ccat 20234905  T
Q  171 ccgtttggataaaatccacactcactgaaagaggttgaagttcgagtatgagg 223  Q
    || ||||||  |||| ||||| |||||||||||||||| ||||||||| ||||    
T  20234904 ccttttggaagaaattcacacccactgaaagaggttgaggttcgagtacgagg 20234852  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 228
Target Start/End: Complemental strand, 31059468 - 31059330
Alignment:
Q  88 gtgtggttgtttgaatttgatcactttcagattgccatgtgcgtgtgcgattgcattgaagatcaagagcnnnnnnnncccatccgtttggataaaatcc 187  Q
    |||||||||||| | ||| ||| ||| |||||| |||||||||||| | |||||| |||||||||||| |        |||||  |||||||| | ||||    
T  31059468 gtgtggttgtttaattttcatcgcttacagatttccatgtgcgtgtacaattgcaatgaagatcaagaac--aacacccccatttgtttggatgacatcc 31059371  T
Q  188 acactcactgaaagaggttgaagttcgagtatgagggtgat 228  Q
    |||||||||  | |||||||| ||||||||| |||||||||    
T  31059370 acactcactagatgaggttgaggttcgagtaagagggtgat 31059330  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 218
Target Start/End: Original strand, 25762004 - 25762142
Alignment:
Q  78 ataaatcaaggtgtggttgtttgaatttgatcactttcagattgccatgtgcgtgtgcgattgcattgaagatcaagagcnnnnnnnncccatccgtttg 177  Q
    |||||||||  ||||||||||||| ||||||||||| | |||| || |||||||||  |||||  ||||||||||| | |        ||  ||||||||    
T  25762004 ataaatcaaaatgtggttgtttgagtttgatcacttacggattaccgtgtgcgtgtatgattggtttgaagatcaaaaacggaaccgccc--tccgtttg 25762101  T
Q  178 gataaaatccacactcactgaaagaggttgaagttcgagta 218  Q
    ||| |||| ||||| ||||| |||||||||| |||||||||    
T  25762102 gatgaaattcacacccactggaagaggttgaggttcgagta 25762142  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 155
Target Start/End: Complemental strand, 31048853 - 31048712
Alignment:
Q  14 atatcaagaaacgctttgcattatctcgcagatgaggctaatcgagcagttggtgtcggtatggataaatcaaggtgtggttgtttgaatttgatcactt 113  Q
    |||||||| ||||||||||||||||| |||   |||| | |||||| |||||||    ||| ||||||||| | |||| ||||||| | ||| ||| |||    
T  31048853 atatcaaggaacgctttgcattatcttgcaatcgaggttgatcgagtagttggttgtagtacggataaatccaagtgtcgttgtttaattttcatcgctt 31048754  T
Q  114 tcagattgccatgtgcgtgtgcgattgcattgaagatcaaga 155  Q
     || ||| |||||||||| |  ||||||| ||||||||||||    
T  31048753 acaaatttccatgtgcgtttatgattgcaatgaagatcaaga 31048712  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 34832285 - 34832211
Alignment:
Q  76 ggataaatcaaggtgtggttgtttgaatttgatcactttcagattgccatgtgcgtgtgcgattgcattgaagat 150  Q
    |||||||||||  ||||||||||||| ||||||||||| | |||| || |||||||||  |||||  ||||||||    
T  34832285 ggataaatcaaaatgtggttgtttgagtttgatcacttacggattaccgtgtgcgtgtatgattggtttgaagat 34832211  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 10925990 - 10926099
Alignment:
Q  117 gattgccatgtgcgtgtgcgattgcattgaagatcaagagcnnnnnnnncccatccgtttggataaaatccacactcactgaaagaggttgaagttcgag 216  Q
    |||||||||||| |||| |||||||||| |||||||||| |        | ||| ||||||||| ||||||||||| | || |||||||||| |||||||    
T  10925990 gattgccatgtgtgtgtacgattgcattaaagatcaagaacaacacc--ctcattcgtttggatgaaatccacacttattggaagaggttgaggttcgag 10926087  T
Q  217 tatgagggtgat 228  Q
    ||||||||||||    
T  10926088 tatgagggtgat 10926099  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 17310867 - 17310783
Alignment:
Q  71 ggtatggataaatcaaggtgtggttgtttgaatttgatcactttcagattgccatgtgcgtgtgcgattgcattgaagatcaaga 155  Q
    |||| |||||||||||  ||||||||||||| ||||||||||| | |||| || |||||||||  || ||  |||||||||||||    
T  17310867 ggtacggataaatcaaaatgtggttgtttgagtttgatcacttacggattaccgtgtgcgtgtatgaatgatttgaagatcaaga 17310783  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 29810178 - 29810262
Alignment:
Q  71 ggtatggataaatcaaggtgtggttgtttgaatttgatcactttcagattgccatgtgcgtgtgcgattgcattgaagatcaaga 155  Q
    |||| |||||||||||  ||||||||||||| |||||||| || | |||| || |||||||||  |||||  |||||||||||||    
T  29810178 ggtacggataaatcaaaatgtggttgtttgagtttgatcatttacggattaccgtgtgcgtgtatgattgatttgaagatcaaga 29810262  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 30213750 - 30213832
Alignment:
Q  71 ggtatggataaatcaaggtgtggttgtttgaatttgatcactttcagattgccatgtgcgtgtgcgattgcattgaagatcaa 153  Q
    |||| |||||||||||  ||||||||||| | ||||||||||| | |||| || |||||||||  |||||  |||||||||||    
T  30213750 ggtacggataaatcaaaatgtggttgtttaagtttgatcacttacggattaccgtgtgcgtgtatgattggtttgaagatcaa 30213832  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 25478947 - 25478885
Alignment:
Q  167 ccatccgtttggataaaatccacactcactgaaagaggttgaagttcgagtatgagggtgata 229  Q
    |||||| ||||||| ||||||||||||||   || ||||||| ||||||||||||||||||||    
T  25478947 ccatccatttggattaaatccacactcaccagaacaggttgaggttcgagtatgagggtgata 25478885  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 48094969 - 48095042
Alignment:
Q  77 gataaatcaaggtgtggttgtttgaatttgatcactttcagattgccatgtgcgtgtgcgattgcattgaagat 150  Q
    ||||||||||  ||||||||||||| ||||||||||| | |||| || |||||||||  |||||  ||||||||    
T  48094969 gataaatcaaaatgtggttgtttgagtttgatcacttacggattaccgtgtgcgtgtatgattggtttgaagat 48095042  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 25478864 - 25478816
Alignment:
Q  229 atctctctgttactagaataggatttgcttcaggtattttctataaaaa 277  Q
    |||||||||||||  |||| ||||||| |||| ||||||||||||||||    
T  25478864 atctctctgttaccggaatgggatttgtttcaagtattttctataaaaa 25478816  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 19217401 - 19217485
Alignment:
Q  71 ggtatggataaatcaaggtgtggttgtttgaatttgatcactttcagattgccatgtgcgtgtgcgattgcattgaagatcaaga 155  Q
    |||| |||||||||||  ||||||||||||| ||||||||||| | |||| || ||||| |||  |||||  |||||||||||||    
T  19217401 ggtacggataaatcaaaatgtggttgtttgagtttgatcacttacggattaccgtgtgcttgtatgattggtttgaagatcaaga 19217485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 41255831 - 41255749
Alignment:
Q  71 ggtatggataaatcaaggtgtggttgtttgaatttgatcactttcagattgccatgtgcgtgtgcgattgcattgaagatcaa 153  Q
    |||| |||||||||||  | ||||||||||| ||||||||||| | |||| || |||||||||  |||||  |||||||||||    
T  41255831 ggtacggataaatcaaaatatggttgtttgagtttgatcacttacggattaccgtgtgcgtgtatgattggtttgaagatcaa 41255749  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 23255018 - 23255097
Alignment:
Q  76 ggataaatcaaggtgtggttgtttgaatttgatcactttcagattgccatgtgcgtgtgcgattgcattgaagatcaaga 155  Q
    |||||||| ||  ||||||||||||| ||||||||||| | |||| || |||||||||  |||||  |||||||||||||    
T  23255018 ggataaataaaaatgtggttgtttgagtttgatcacttacggattaccgtgtgcgtgtatgattggtttgaagatcaaga 23255097  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 756290 - 756338
Alignment:
Q  170 tccgtttggataaaatccacactcactgaaagaggttgaagttcgagta 218  Q
    ||||||| ||| |||| ||||||||||| |||||||||| |||||||||    
T  756290 tccgtttcgatgaaattcacactcactggaagaggttgaggttcgagta 756338  T

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