View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17738_high_13 (Length: 379)

Name: NF17738_high_13
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17738_high_13
NF17738_high_13
[»] chr4 (2 HSPs)
chr4 (1-369)||(42448776-42449144)
chr4 (157-227)||(20425740-20425810)
[»] chr5 (1 HSPs)
chr5 (97-229)||(42261433-42261565)
[»] chr1 (1 HSPs)
chr1 (154-244)||(51869132-51869222)
[»] chr6 (1 HSPs)
chr6 (193-249)||(29136437-29136493)
[»] chr2 (1 HSPs)
chr2 (154-229)||(29353315-29353390)
[»] chr8 (1 HSPs)
chr8 (171-249)||(31135842-31135920)
[»] scaffold0134 (1 HSPs)
scaffold0134 (174-226)||(17139-17191)


Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 42448776 - 42449144
Alignment:
Q  1 tattttcacatttgcatttcatatttctctcaatctcattcccctctagttgcaggaatccaccatcggactcggagatggaaaaatcagtgttagttgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42448776 tattttcacatttgcatttcatatttctctcaatctcattcccctctagttgcaggaatccaccatcggactcggagatggaaaaatcagtgttagttgc 42448875  T
Q  101 tgtcactaacgaaaaggtttgcaactatttacctcatgatatagtgctcttcattttgtcaaaacttcccttaaaatcattgaagagatttcaatgcgta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42448876 tgtcactaacgaaaaggtttgcaactatttacctcatgatatagtgctcttcattttgtcaaaacttcccttaaaatcattgaagagatttcaatgcgta 42448975  T
Q  201 tgcaaactatggtctctcttatttgaaaatcctcgttttatgaaaatgtacaccgacaatatcatccatggtaatcatccttattatgatgatacatttc 300  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42448976 tgcaaactatggtctctcttatttggaaatcctcgttttatgaaaatgtacaccgacaatatcatccatggtaatcatccttattatgatgatacatttc 42449075  T
Q  301 ttgtcctgcacaaattgcttcctaggacatatgaatacagtaatcattgcgagttttattggctctctg 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42449076 ttgtcctgcacaaattgcttcctaggacatatgaatacagtaatcattgcgacttttattggctctctg 42449144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 20425740 - 20425810
Alignment:
Q  157 tgtcaaaacttcccttaaaatcattgaagagatttcaatgcgtatgcaaactatggtctctcttatttgaa 227  Q
    ||||||||||||| |||||||| |||||  ||||| |||||||||||||   ||||||||| |||||||||    
T  20425740 tgtcaaaacttcctttaaaatctttgaaacgatttgaatgcgtatgcaatgcatggtctcttttatttgaa 20425810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 97 - 229
Target Start/End: Original strand, 42261433 - 42261565
Alignment:
Q  97 ttgctgtcactaacgaaaaggtttgcaactatttacctcatgatatagtgctcttcattttgtcaaaacttcccttaaaatcattgaagagatttcaatg 196  Q
    ||||||||| | ||||||||||||| | | |||||||||||||| | ||||||||||||||||||||||| || ||||||||||||||| | |||  |||    
T  42261433 ttgctgtcattgacgaaaaggtttggatcaatttacctcatgatcttgtgctcttcattttgtcaaaactgcctttaaaatcattgaagcggtttatatg 42261532  T
Q  197 cgtatgcaaactatggtctctcttatttgaaaa 229  Q
     |||||||||  ||||||||||||||| |||||    
T  42261533 tgtatgcaaatcatggtctctcttattcgaaaa 42261565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 244
Target Start/End: Original strand, 51869132 - 51869222
Alignment:
Q  154 ttttgtcaaaacttcccttaaaatcattgaagagatttcaatgcgtatgcaaactatggtctctcttatttgaaaatcctcgttttatgaa 244  Q
    |||||||||||||||| |||||||| |||||  |||||  ||| | || ||||| ||||||||||||||||||| | |||| ||| |||||    
T  51869132 ttttgtcaaaacttccgttaaaatctttgaaacgatttggatgtgcatacaaaccatggtctctcttatttgaagaccctcatttcatgaa 51869222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 29136437 - 29136493
Alignment:
Q  193 aatgcgtatgcaaactatggtctctcttatttgaaaatcctcgttttatgaaaatgt 249  Q
    ||||||| ||||||  |||||||||||||||||||||| ||||||| ||||| ||||    
T  29136437 aatgcgtttgcaaatcatggtctctcttatttgaaaatactcgtttcatgaacatgt 29136493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 29353390 - 29353315
Alignment:
Q  154 ttttgtcaaaacttcccttaaaatcattgaagagatttcaatgcgtatgcaaactatggtctctcttatttgaaaa 229  Q
    |||||||||||||||| |||||||| |||||| | |||  |||||||   |||  |||||||||||||||||||||    
T  29353390 ttttgtcaaaacttcctttaaaatctttgaagcgttttggatgcgtaaataaaacatggtctctcttatttgaaaa 29353315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 31135920 - 31135842
Alignment:
Q  171 ttaaaatcattgaagagatttcaatgcgtatgcaaactatggtctctcttatttgaaaatcctcgttttatgaaaatgt 249  Q
    |||||||  |||||| |||||  ||| |||||||||| ||||||||| ||||||||||| |||  ||||||||| ||||    
T  31135920 ttaaaattcttgaagcgatttgcatgtgtatgcaaaccatggtctcttttatttgaaaaccctatttttatgaacatgt 31135842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 17191 - 17139
Alignment:
Q  174 aaatcattgaagagatttcaatgcgtatgcaaactatggtctctcttatttga 226  Q
    ||||| |||||||||||| ||||||| ||||||  ||||||||||||| ||||    
T  17191 aaatctttgaagagatttgaatgcgtttgcaaatcatggtctctcttaattga 17139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University