View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17738_high_21 (Length: 316)
Name: NF17738_high_21
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17738_high_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 166; Significance: 8e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 121 - 302
Target Start/End: Original strand, 25432689 - 25432869
Alignment:
| Q |
121 |
tatgacttatcaaattcacacatataattggttgtgatttgctaacgaatcgttgaattaaacaaccaaatgaaaacttgaagagaaagtcatacatact |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25432689 |
tatgacttatcaaattcacacatataattggttgtgatttgctgacgaatcgttgaattaaacaaccaaatgaaaacttgaagagaaagtcatacatact |
25432788 |
T |
|
| Q |
221 |
tatctagaaaaaccaatcagatttgaaggaaagagcagaaggagtagaagatccaaaatcaagagaatcagaatgaggaatt |
302 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25432789 |
tatctag-aaaaccgatcagatttgaaggaaagagcagaaggagtagaagatccaaaatcaagagaatcagaatgaggaatt |
25432869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 133 - 301
Target Start/End: Original strand, 25567218 - 25567388
Alignment:
| Q |
133 |
aattcacacatataattggttgtgatttgctaacgaatcgttgaattaaacaaccaaatgaaaacttgaagagaaagtcatacatac---ttatctagaa |
229 |
Q |
| |
|
|||||||||||||||||| |||||| || || || |||| ||||||||||| | |||||||||||||| |||||||||||||||||| || ||||||| |
|
|
| T |
25567218 |
aattcacacatataattgattgtgactttctgacaaatctttgaattaaactatcaaatgaaaacttggagagaaagtcatacatacctcttgtctagaa |
25567317 |
T |
|
| Q |
230 |
aaaccaatcagatttgaaggaaagagcagaaggagtagaagatccaaaatcaagagaatcagaatgaggaat |
301 |
Q |
| |
|
|| || ||||||| ||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |
|
|
| T |
25567318 |
aa-ccgatcagatctgaaggaaagagcagaaggagtagaagatccgaaatcaagagagtcggaatgaggaat |
25567388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 236 - 301
Target Start/End: Original strand, 25833206 - 25833271
Alignment:
| Q |
236 |
atcagatttgaaggaaagagcagaaggagtagaagatccaaaatcaagagaatcagaatgaggaat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25833206 |
atcagatttgaaggaaagagcagaaggagtagaagatccaaaatcaagagaatccgaatgaggaat |
25833271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University