View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17738_high_33 (Length: 237)
Name: NF17738_high_33
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17738_high_33 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 32001486 - 32001282
Alignment:
| Q |
16 |
atgaagaaaaaggagtgagataagataaactcctaaagtagtgactaccaaaatatacatttatttaagaagttggtccgtctataaagttaatgaacaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32001486 |
atgaagaaaaaggagtgagataagataaactcctaaagtagtgaccaccaaaatatacatttatttaagaagttggtccgtctataaagttaatgaacaa |
32001387 |
T |
|
| Q |
116 |
tgatggttgtatacgcatgtgcaagggtctagactaaaagattttcggttaggaatcccaacaaaaaccagtgcatgtgcagtttgatttgtcacttgtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32001386 |
tgatggttgtatacgcatgtgcaagggtctagactaaaagattttcggttaggaatcccaacaaaaaccagtgcatgtgcagtttgatttgtcacttgtt |
32001287 |
T |
|
| Q |
216 |
ctgtt |
220 |
Q |
| |
|
||||| |
|
|
| T |
32001286 |
ctgtt |
32001282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University