View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17738_high_38 (Length: 204)

Name: NF17738_high_38
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17738_high_38
NF17738_high_38
[»] chr3 (10 HSPs)
chr3 (18-184)||(25173624-25173794)
chr3 (120-180)||(50432789-50432849)
chr3 (90-141)||(5434051-5434103)
chr3 (78-126)||(3148180-3148228)
chr3 (90-142)||(4042287-4042339)
chr3 (102-145)||(5260493-5260537)
chr3 (102-145)||(9636296-9636340)
chr3 (70-141)||(40612530-40612602)
chr3 (63-182)||(42762172-42762292)
chr3 (81-117)||(46860406-46860442)
[»] chr4 (5 HSPs)
chr4 (63-184)||(6766207-6766329)
chr4 (92-179)||(43272440-43272527)
chr4 (92-146)||(43302620-43302674)
chr4 (125-184)||(6200006-6200065)
chr4 (81-117)||(40632379-40632415)
[»] chr5 (5 HSPs)
chr5 (63-142)||(32579139-32579219)
chr5 (107-184)||(35616129-35616206)
chr5 (107-179)||(8038156-8038228)
chr5 (102-141)||(16452035-16452075)
chr5 (63-177)||(32576435-32576551)
[»] chr2 (5 HSPs)
chr2 (63-158)||(43405880-43405978)
chr2 (96-177)||(24197845-24197926)
chr2 (63-184)||(41446055-41446176)
chr2 (65-117)||(3160247-3160299)
chr2 (64-184)||(41454153-41454271)
[»] chr6 (1 HSPs)
chr6 (73-184)||(186639-186751)
[»] scaffold0053 (1 HSPs)
scaffold0053 (66-146)||(24971-25052)
[»] chr1 (4 HSPs)
chr1 (120-184)||(12318654-12318717)
chr1 (81-186)||(16216626-16216732)
chr1 (63-179)||(1485907-1486027)
chr1 (90-142)||(13945104-13945156)
[»] chr7 (3 HSPs)
chr7 (81-177)||(23793966-23794062)
chr7 (81-182)||(1360286-1360388)
chr7 (85-182)||(3904751-3904848)
[»] scaffold0219 (1 HSPs)
scaffold0219 (85-141)||(27617-27674)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 25173794 - 25173624
Alignment:
Q  18 aatctcatgtaaccaaaagagggaacttttatgtatttagaggtt----gttgagtgtctttgagtgagattcttaagttgagaaacaattgtaaacacc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| |    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25173794 aatctcatgtaaccaaaagagggaacttttatgtatttagaggctaagagttgcgtgtctttgagtgagattcttaagttgagaaacaattgtaaacacc 25173695  T
Q  114 ttggtaagtgaaatcattgagtctcttggtcacggctagagattctggaaaagggtagaaattaggtttgt 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25173694 ttggtaagtgaaatcattgagtctcttggtcacggctagagattctggaaaagggtagaaattaggtttgt 25173624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 50432849 - 50432789
Alignment:
Q  120 agtgaaatcattgagtctcttggtcacggctagagattctggaaaagggtagaaattaggt 180  Q
    ||||||||||||||||||||||||||| |   ||||||| |||||||||||||||||||||    
T  50432849 agtgaaatcattgagtctcttggtcacaggatgagattcgggaaaagggtagaaattaggt 50432789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 5434103 - 5434051
Alignment:
Q  90 agttgagaaacaattgtaaacaccttggtaagtg-aaatcattgagtctcttg 141  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||||| |||||    
T  5434103 agttgggaaacaattgtaaacaccttggtgagtgaaaatcattgagtgtcttg 5434051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 3148228 - 3148180
Alignment:
Q  78 gtgagattcttaagttgagaaacaattgtaaacaccttggtaagtgaaa 126  Q
    |||||||||||| |||| ||||||||||||||||  ||||| |||||||    
T  3148228 gtgagattcttaggttgggaaacaattgtaaacattttggtgagtgaaa 3148180  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 4042287 - 4042339
Alignment:
Q  90 agttgagaaacaattgtaaacaccttggtaagtgaaatcattgagtctcttgg 142  Q
    ||||| ||||||||||| |||||||| |  || ||||||||||||||||||||    
T  4042287 agttgggaaacaattgtgaacaccttaggtagagaaatcattgagtctcttgg 4042339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 5260537 - 5260493
Alignment:
Q  102 attgtaaacaccttggtaagtg-aaatcattgagtctcttggtca 145  Q
    ||||||||||||||||| |||| |||||||||||| |||||||||    
T  5260537 attgtaaacaccttggtgagtgaaaatcattgagtgtcttggtca 5260493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 9636340 - 9636296
Alignment:
Q  102 attgtaaacaccttggtaagtg-aaatcattgagtctcttggtca 145  Q
    ||||||||||||||||| |||| |||||||||||| |||||||||    
T  9636340 attgtaaacaccttggtgagtgaaaatcattgagtgtcttggtca 9636296  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 40612530 - 40612602
Alignment:
Q  70 gtctttgagtgagattcttaagttgagaaacaattgtaaacaccttggtaagtg-aaatcattgagtctcttg 141  Q
    ||||||| |||||||||||   |||  ||| ||||||||||| ||||| ||||| ||||||||||||||||||    
T  40612530 gtctttgggtgagattcttggtttggaaaataattgtaaacaacttggcaagtgaaaatcattgagtctcttg 40612602  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 182
Target Start/End: Original strand, 42762172 - 42762292
Alignment:
Q  63 gttgagtgtctttgagtgagattcttaagttgagaaacaattgtaaacaccttggta-agtgaaatcattgagtctcttggtcacggctagagattctgg 161  Q
    ||||||||| |||| |||||||||||  ||||  | |||||| ||||||| |||| | |||||||||||||||| | ||  ||||||  ||||||||  |    
T  42762172 gttgagtgtttttgggtgagattcttgtgttggaagacaattataaacacattggaagagtgaaatcattgagtttttttatcacggaaagagattcgag 42762271  T
Q  162 aaaagggtagaaattaggttt 182  Q
    ||  |||||||||||| ||||    
T  42762272 aattgggtagaaattaagttt 42762292  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 46860406 - 46860442
Alignment:
Q  81 agattcttaagttgagaaacaattgtaaacaccttgg 117  Q
    |||||||  ||||||||||||||||||||||||||||    
T  46860406 agattctagagttgagaaacaattgtaaacaccttgg 46860442  T

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Target: chr4 (Bit Score: 59; Significance: 3e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 63 - 184
Target Start/End: Complemental strand, 6766329 - 6766207
Alignment:
Q  63 gttgagtgtctttgagtgagattcttaagttgagaaacaattgtaaacaccttgg-taagtgaaatcattgagtctcttggtcacggctagagattctgg 161  Q
    ||||||| | |||| |||||||| ||  |||| ||||||||| ||||||| |||| | ||||||||||||||||||||||||||||| ||||||||| ||    
T  6766329 gttgagtctatttgggtgagattattgggttgtgaaacaattctaaacactttgggtgagtgaaatcattgagtctcttggtcacgggtagagattcggg 6766230  T
Q  162 aaaagggtagaaattaggtttgt 184  Q
    |||| | ||||||||||||||||    
T  6766229 aaaaagatagaaattaggtttgt 6766207  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 43272527 - 43272440
Alignment:
Q  92 ttgagaaacaattgtaaacaccttggtaagtgaaatcattgagtctcttggtcacggctagagattctggaaaagggtagaaattagg 179  Q
    ||||||| |||||||||||| |||||| ||||||||||||||||||||||||||| |  ||| |||   ||||| |||||||||||||    
T  43272527 ttgagaaccaattgtaaacatcttggttagtgaaatcattgagtctcttggtcacaggaagatatttgagaaaatggtagaaattagg 43272440  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 43302674 - 43302620
Alignment:
Q  92 ttgagaaacaattgtaaacaccttggtaagtgaaatcattgagtctcttggtcac 146  Q
    |||||||| ||||||||||| |||||| |||||||||||||||||||||| ||||    
T  43302674 ttgagaaaaaattgtaaacatcttggttagtgaaatcattgagtctcttgatcac 43302620  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 6200065 - 6200006
Alignment:
Q  125 aatcattgagtctcttggtcacggctagagattctggaaaagggtagaaattaggtttgt 184  Q
    ||||||||||||||||||||||    |||||||| |||||| || |||||||||||||||    
T  6200065 aatcattgagtctcttggtcacttgaagagattcaggaaaatggcagaaattaggtttgt 6200006  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 40632379 - 40632415
Alignment:
Q  81 agattcttaagttgagaaacaattgtaaacaccttgg 117  Q
    |||||||  ||||||||||||||||||||||||||||    
T  40632379 agattctagagttgagaaacaattgtaaacaccttgg 40632415  T

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Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 32579139 - 32579219
Alignment:
Q  63 gttgagtgtctttgagtgagattcttaagttgagaaacaattgtaaacaccttgg-taagtgaaatcattgagtctcttgg 142  Q
    ||||||||||| || |  ||||||||  ||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  32579139 gttgagtgtctctggggtagattcttgggttgagaaataattgtaaacaccttggataagtgaaatcattgagtctcttgg 32579219  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 35616129 - 35616206
Alignment:
Q  107 aaacaccttgg-taagtgaaatcattgagtctcttggtcacggctagagattctggaaaagggtagaaattaggtttgt 184  Q
    ||||||||||| | |||||||||||||||||||||| ||||||  |||||||   |||| | |||||||||||||||||    
T  35616129 aaacaccttgggtgagtgaaatcattgagtctcttgttcacgggaagagatt-gagaaatgagtagaaattaggtttgt 35616206  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 8038156 - 8038228
Alignment:
Q  107 aaacaccttggtaagtgaaatcattgagtctcttggtcacggctagagattctggaaaagggtagaaattagg 179  Q
    |||||||||||  |||||||||||| ||||| |||||||||   ||||||||   |||| |||||||||||||    
T  8038156 aaacaccttggatagtgaaatcatttagtcttttggtcacgaaaagagattcaaaaaaatggtagaaattagg 8038228  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 141
Target Start/End: Original strand, 16452035 - 16452075
Alignment:
Q  102 attgtaaacaccttggtaagtga-aatcattgagtctcttg 141  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  16452035 attgtaaacaccttggtaagtgacaatcattgagtgtcttg 16452075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 177
Target Start/End: Complemental strand, 32576551 - 32576435
Alignment:
Q  63 gttgagtgtctttgagtgagattcttaagttgagaaacaattgtaaacacct-tggtaagtg-aaatcattgagtctcttggtcacggctagagattctg 160  Q
    |||||||||  ||| |||||||||||  |||| |||||||||||||||||||  | | |||| |||||||| ||||||||| ||||    |||||||| |    
T  32576551 gttgagtgttattgggtgagattcttgggttgggaaacaattgtaaacacctaagatgagtgaaaatcattaagtctcttgatcacaataagagattcgg 32576452  T
Q  161 gaaaagggtagaaatta 177  Q
    ||||| | |||||||||    
T  32576451 gaaaatgatagaaatta 32576435  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 43405880 - 43405978
Alignment:
Q  63 gttgagtgtctttgagtgagattcttaagttgagaaacaattgtaaacaccttggta-agtgaaatcattgag--tctcttggtcacggctagagattc 158  Q
    |||||||||||||  |||||||||||  |||||||||||||||||||||| |||  | |||||||||||||||  ||||||| |||||| |||||||||    
T  43405880 gttgagtgtcttttggtgagattcttgggttgagaaacaattgtaaacactttgtaagagtgaaatcattgagtctctcttgatcacggatagagattc 43405978  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 24197845 - 24197926
Alignment:
Q  96 gaaacaattgtaaacaccttggtaagtgaaatcattgagtctcttggtcacggctagagattctggaaaagggtagaaatta 177  Q
    ||||||||||||||||||||||  |   ||||||||| |||||||||||||||  |||||||  ||||||||||||||||||    
T  24197845 gaaacaattgtaaacaccttgggtacataaatcattgggtctcttggtcacgggaagagatttgggaaaagggtagaaatta 24197926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 184
Target Start/End: Original strand, 41446055 - 41446176
Alignment:
Q  63 gttgagtgtctttgagtgagattcttaagttgagaaacaattgtaaacaccttggtaagtg-aaatcattgagtctcttggtcacggctagagattctgg 161  Q
    |||||||||||||| |||| ||||||| ||||  ||||||||||||| | |||||| |||| ||||||||||| |||||  ||||||  ||||||||       
T  41446055 gttgagtgtctttgggtgaaattcttaggttggaaaacaattgtaaata-cttggtgagtgaaaatcattgagcctcttaatcacggaaagagattcgaa 41446153  T
Q  162 aaaagggtagaaattaggtttgt 184  Q
    |||| ||||||||||| ||||||    
T  41446154 aaaaaggtagaaattatgtttgt 41446176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 3160247 - 3160299
Alignment:
Q  65 tgagtgtctttgagtgagattcttaagttgagaaacaattgtaaacaccttgg 117  Q
    |||| ||||||  |||||||||||| ||||||||||||| |||||||| ||||    
T  3160247 tgagggtctttaggtgagattcttaggttgagaaacaatggtaaacactttgg 3160299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 41454153 - 41454271
Alignment:
Q  64 ttgagtgtctttgagtgagattcttaagttgagaaacaattgtaaacaccttggtaagtgaaatcattgagtctcttggtcacggctagagattctggaa 163  Q
    |||||||| ||||||||||||||||  |||| |||||||||||  ||||||| || | | || ||||||||| ||||| ||| ||  | |||||| | ||    
T  41454153 ttgagtgt-tttgagtgagattcttgggttgggaaacaattgtctacaccttagtgaataaattcattgagtatcttgatcatggaaaaagattc-gaaa 41454250  T
Q  164 aagggtagaaattaggtttgt 184  Q
    || |||||||||||| |||||    
T  41454251 aatggtagaaattagatttgt 41454271  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 184
Target Start/End: Original strand, 186639 - 186751
Alignment:
Q  73 tttgagtgagattcttaagttgagaaacaattgtaaacaccttg-gtaagtgaaatcattgagtctcttggtcacggctagagattctggaaaagggtag 171  Q
    ||||||||||||||||  |||| ||| |||||||||||| |||| ||  | |||||||| |||||||||||||||||  ||||| || | |||| |||||    
T  186639 tttgagtgagattcttgggttgggaagcaattgtaaacatcttgtgtgtgagaaatcatcgagtctcttggtcacggaaagagaatcggaaaaatggtag 186738  T
Q  172 aaattaggtttgt 184  Q
    |||| ||||||||    
T  186739 aaataaggtttgt 186751  T

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Target: scaffold0053 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 146
Target Start/End: Original strand, 24971 - 25052
Alignment:
Q  66 gagtgtctttgagtgagattcttaagttgagaaacaattgtaaacaccttggta-agtgaaatcattgagtctcttggtcac 146  Q
    |||||||| || |||||||||||  |||  |||||||||||||||||||||| | |||||||||||||||||| ||| ||||    
T  24971 gagtgtctctgggtgagattcttgggtttggaaacaattgtaaacaccttgggagagtgaaatcattgagtctgttgatcac 25052  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 12318717 - 12318654
Alignment:
Q  120 agtgaaatcattgagtctcttggtcacggctagagattctggaaaagggtagaaattaggtttgt 184  Q
    |||||||||||||||| ||||| ||| || |||||||| |||||| |||||||||||||||||||    
T  12318717 agtgaaatcattgagtttcttgttcatgggtagagatt-tggaaatgggtagaaattaggtttgt 12318654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 16216732 - 16216626
Alignment:
Q  81 agattcttaagttgagaaacaattgt-aaacaccttggtaagtgaaatcattgagtctcttggtcacggctagagattctggaaaagggtagaaattagg 179  Q
    |||||||  ||||||||||||||| | ||| ||||| |  ||| ||||||||||||||||||  |||| | ||||| ||| |||||  ||||||||||||    
T  16216732 agattctagagttgagaaacaattatgaaataccttaggtagtaaaatcattgagtctcttgaccacgacaagagactctagaaaaatgtagaaattagg 16216633  T
Q  180 tttgtct 186  Q
    |||||||    
T  16216632 tttgtct 16216626  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 1486027 - 1485907
Alignment:
Q  63 gttgagtgtctttgagtgagattcttaagtt-gagaaacaattgtaaacacctt-ggtaagtg-aaatcattgagtctcttggtcacggctagagattct 159  Q
    |||||| ||||||| |||||||||||  ||| | ||||||||||||||||| ||  || |||| |||||||||||| |||| ||||| |  ||||||||     
T  1486027 gttgagcgtctttgtgtgagattcttgtgttggggaaacaattgtaaacacattaagtgagtgaaaatcattgagtatctttgtcacaggaagagattcg 1485928  T
Q  160 gg-aaaagggtagaaattagg 179  Q
    || ||||| ||||||||||||    
T  1485927 ggtaaaagtgtagaaattagg 1485907  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 13945156 - 13945104
Alignment:
Q  90 agttgagaaacaattgtaaacaccttggtaagtgaaatcattgagtctcttgg 142  Q
    ||||| ||||||||||| ||||||||||  || |||| |||||||||||||||    
T  13945156 agttgggaaacaattgtgaacaccttgggtagagaaaccattgagtctcttgg 13945104  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 177
Target Start/End: Complemental strand, 23794062 - 23793966
Alignment:
Q  81 agattcttaagttgagaaacaatt-gtaaacaccttggtaagtgaaatcattgagtctcttggtcacggctagagattctggaaaagggtagaaatta 177  Q
    |||||||  |||||| |||||||| |||||||| ||||  || ||||||||||||||||||||| ||||  ||||||||  ||||| |||||||||||    
T  23794062 agattctagagttgaaaaacaatttgtaaacacattgggtagggaaatcattgagtctcttggttacgg-aagagattcaagaaaatggtagaaatta 23793966  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 1360388 - 1360286
Alignment:
Q  81 agattcttaagttgagaaacaattgt-aaacacctt-ggtaagtgaaatcattgagtctcttggtcacggctagagattctggaaaagggtagaaattag 178  Q
    |||||||  |||||| |||||||||  ||||||||| ||| |||||||||||||||||||||| ||| ||   ||||||  |||||| ||||||||||||    
T  1360388 agattctagagttgaaaaacaattgggaaacacctttggtgagtgaaatcattgagtctcttgttcatggaatgagatt-gggaaaaaggtagaaattag 1360290  T
Q  179 gttt 182  Q
    ||||    
T  1360289 gttt 1360286  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 182
Target Start/End: Complemental strand, 3904848 - 3904751
Alignment:
Q  85 tcttaagttgagaaacaattgtaaacaccttggta-agtgaaatcattgagtctcttggtcacggctagagattctggaaaagggtagaaattaggttt 182  Q
    |||| |||| ||||||| |||||||||||||||   |||||||||||||||||||||| ||   |  |||||||  |||||| ||||||||||||||||    
T  3904848 tcttgagttaagaaacatttgtaaacaccttgggcgagtgaaatcattgagtctcttgttcttaggaagagatt-gggaaaatggtagaaattaggttt 3904751  T

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Target: scaffold0219 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 27674 - 27617
Alignment:
Q  85 tcttaagttgagaaacaattgtaaacaccttgg-taagtgaaatcattgagtctcttg 141  Q
    |||| ||||| |||||| ||||||||||||||| | ||||||||| ||||||||||||    
T  27674 tcttgagttgggaaacatttgtaaacaccttggatgagtgaaatctttgagtctcttg 27617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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