View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17738_low_11 (Length: 387)
Name: NF17738_low_11
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17738_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 41481757 - 41481387
Alignment:
| Q |
1 |
tggaatagtatatccattttggataaatttgcgctacagcttaaatttaataaatcctgttggcnnnnnnncgaaataccttttaattgttgcccaaatt |
100 |
Q |
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| T |
41481757 |
tggaatagtatatccattttggataaatttgcgctacagcttaaatttaataaatcctgttggctttttttcgatataccttttaattgttgcccaaatt |
41481658 |
T |
|
| Q |
101 |
aaatttagtgactaacaacaatcacataagccaacaaaatgtagaatacattgaaaaaattctaacaagtggagtaaaatatagagggacgcata---tt |
197 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
41481657 |
gaatttattgactaacaacaatcacataagccaacaaaatgtagaatacattgaaaaaattctaacaagtggagtaaaatatagagggacacatattctt |
41481558 |
T |
|
| Q |
198 |
cttcaacatgattttggtttctatttgataagtttctagtagcaaatgttatgatttagttcacataaccaatctctatcaacataatcttgaaacacnn |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41481557 |
cttcaacatgattttggtttctatttgataagtttctagtagcaaatgttatgatttagttcacataaccaatctctatcaacataatcttgaaacac-t |
41481459 |
T |
|
| Q |
298 |
nnnnnnatgtaatccccaatcttcatgtccttgtttctattagcgtagcttttgtttcttgcatcgtaagca |
369 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41481458 |
ttttttatgcaatccccaatcttcatgtccttgtttctattagcgtagcttttgtttcttgcatcgtaagca |
41481387 |
T |
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