View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17738_low_12 (Length: 382)

Name: NF17738_low_12
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17738_low_12
NF17738_low_12
[»] chr1 (3 HSPs)
chr1 (69-368)||(52243383-52243682)
chr1 (248-365)||(33677638-33677755)
chr1 (63-192)||(24598855-24598983)
[»] chr4 (7 HSPs)
chr4 (74-358)||(53146837-53147114)
chr4 (186-358)||(48825306-48825477)
chr4 (214-333)||(55416901-55417020)
chr4 (213-314)||(26698102-26698203)
chr4 (251-366)||(31160930-31161047)
chr4 (63-117)||(48825251-48825305)
chr4 (235-302)||(48988969-48989036)
[»] chr5 (3 HSPs)
chr5 (93-329)||(35562479-35562716)
chr5 (186-368)||(27626109-27626286)
chr5 (250-302)||(36274880-36274932)
[»] chr2 (3 HSPs)
chr2 (199-358)||(9145585-9145744)
chr2 (213-314)||(26159642-26159743)
chr2 (267-314)||(27001281-27001328)
[»] chr8 (3 HSPs)
chr8 (213-358)||(13318027-13318172)
chr8 (253-314)||(30541914-30541975)
chr8 (242-286)||(36019029-36019073)
[»] chr6 (2 HSPs)
chr6 (224-366)||(12250876-12251018)
chr6 (267-314)||(34703322-34703369)
[»] chr3 (2 HSPs)
chr3 (67-335)||(21393735-21393997)
chr3 (242-314)||(3452247-3452319)
[»] chr7 (2 HSPs)
chr7 (248-336)||(34257588-34257676)
chr7 (253-310)||(6561153-6561210)


Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 69 - 368
Target Start/End: Complemental strand, 52243682 - 52243383
Alignment:
Q  69 gaaatttagtctctcaagtacaagaggtgccagagaaaagctaagaaaagtatacgttacatcaggttaccaacaagaaattaaacattatagccacaaa 168  Q
    |||| |||||||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  52243682 gaaacttagtctctcaaatacaagaggtgtcagagaagagctaagaaaagtatatgttacatcagcttaccaacaagaaattaaacattatagccacaaa 52243583  T
Q  169 ggagcacgctaaaacacacaaaaaagagagtgaaactaattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaat 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52243582 ggagcacgctaaaacacacaaaaaagagagtgaaactaattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaat 52243483  T
Q  269 taggatgatttgccttcagccactagaaggattggagcttaattttgtccacaagctgattaatagaaagccccttttgttggaaaactccagcattcat 368  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52243482 taggatgatttgccttcagccaccagaaggattggagcttaattttgtccacaagctgattaatagaaagccccttttgttggaaaactctagcattcat 52243383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 248 - 365
Target Start/End: Complemental strand, 33677755 - 33677638
Alignment:
Q  248 tgtggtaattaaatgtaaaattaggatgatttgccttcagccactagaaggattggagcttaattttgtccacaagctgattaatagaaagccccttttg 347  Q
    |||| |||||||| | ||||||| ||||||||| ||||| ||| ||||||||||||||||||||||| |||| ||||||| | || |||  |||||||||    
T  33677755 tgtgataattaaaagcaaaattaagatgatttgtcttcaaccattagaaggattggagcttaattttatccataagctgaatgattgaattccccttttg 33677656  T
Q  348 ttggaaaactccagcatt 365  Q
    ||| ||||||| ||||||    
T  33677655 ttgaaaaactctagcatt 33677638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 24598855 - 24598983
Alignment:
Q  63 taaccagaaatttagtctctcaagtacaagaggtgccagagaaaagctaagaaaagtatacgttacatcaggttaccaacaagaaattaaacattatagc 162  Q
    |||||||||| ||||||||||||  |||||| |||  | |||| ||||||||| ||| |  ||||||| |||||||||| |||||||||| ||||| |||    
T  24598855 taaccagaaacttagtctctcaaacacaagatgtgaaaaagaagagctaagaagagtgtctgttacatgaggttaccaaaaagaaattaagcattacagc 24598954  T
Q  163 cacaaaggagcacgctaaaacacacaaaaa 192  Q
    ||||||   ||||||||||| |||||||||    
T  24598955 cacaaaaaggcacgctaaaa-acacaaaaa 24598983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 74 - 358
Target Start/End: Original strand, 53146837 - 53147114
Alignment:
Q  74 ttagtctctcaagtacaagaggtgccagagaaaagctaagaaaagtatacgttacatcaggttaccaacaagaaattaaacattatagccacaaaggag- 172  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||    || ||| |||||||  |||||||| |||  ||| | |||||||| ||     
T  53146837 ttagtctctcaagcacgagaggtgccagagaaaagctaagaaaagtat----tagatctggttacctgcaagaaat-aaatgttacaaccacaaagcaga 53146931  T
Q  173 cacgctaaaacacacaaaaaagagagtgaaactaattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattagg 272  Q
    |||||||||| |||||||||| | | ||||||||||| |||||||||| ||||||||| | ||||||  ||||  | ||||||||||| | ||||||| |    
T  53146932 cacgctaaaaaacacaaaaaa-atattgaaactaattttgaactcccaaacataaaagaggattaagccaccacatatggtaattaaaagcaaaattatg 53147030  T
Q  273 atgatttgccttcagccactagaaggattggagcttaattttgtccacaagctgattaatagaaagccccttttgttggaaaactc 358  Q
    |||||||||  |||  ||| ||||  |||| || ||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  53147031 atgatttgc--tcaatcaccagaaaaattgtagtttaattttgtccacatgctgattaatagaaagcccattttgttggaaaactc 53147114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 186 - 358
Target Start/End: Original strand, 48825306 - 48825477
Alignment:
Q  186 acaaaaaagagagtgaaactaattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttc 285  Q
    |||||||| ||| |||||||||||||||||||||| ||||||||||| ||||||  || |  |||||||||||||   ||||||||||||||||||||||    
T  48825306 acaaaaaatagattgaaactaattatgaactcccaaacataaaaggggattaagccacgacatgtggtaattaaaaacaaaattaggatgatttgccttc 48825405  T
Q  286 agccactagaaggattggagcttaattttgtccacaagctgattaatagaaagccccttttgttggaaaactc 358  Q
    | |||| | || ||||| | ||||||||||| | ||||||||||||||||||||||||||| ||| |||||||    
T  48825406 aaccaccaaaaagattgtaccttaattttgt-ctcaagctgattaatagaaagccccttttattgaaaaactc 48825477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 214 - 333
Target Start/End: Complemental strand, 55417020 - 55416901
Alignment:
Q  214 actcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttcagccactagaaggattggagcttaattt 313  Q
    ||||||| ||| | ||| ||||||||  ||||||||||||||||||| | ||||||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  55417020 actcccaaacaaacaagagaattaagccaccatgtgtggtaattaaaagcaaaattaggatgatttgccttcaaccaccagaagaattgtagcttaattt 55416921  T
Q  314 tgtccacaagctgattaata 333  Q
    | || | |||||||| ||||    
T  55416920 tatctataagctgatgaata 55416901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 213 - 314
Target Start/End: Complemental strand, 26698203 - 26698102
Alignment:
Q  213 aactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttcagccactagaaggattggagcttaatt 312  Q
    |||||||| ||||||||| | ||||||  ||||  |||| |||||||| | ||||||||||||||||| ||||| |||| |||||||||| |||||||||    
T  26698203 aactcccaaacataaaagaggattaagccaccacatgtgataattaaaagcaaaattaggatgatttggcttcaaccaccagaaggattgaagcttaatt 26698104  T
Q  313 tt 314  Q
    ||    
T  26698103 tt 26698102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 366
Target Start/End: Original strand, 31160930 - 31161047
Alignment:
Q  251 ggtaattaaatgtaaaattaggatgatttgc--cttcagccactagaaggattggagcttaattttgtccacaagctgattaatagaaagccccttttgt 348  Q
    |||||||||| | |||||||||||||||| |  ||||| |||| | |||| ||||||||||||||| || | ||| ||||| ||||||  ||||||||||    
T  31160930 ggtaattaaaagcaaaattaggatgatttacaccttcaaccaccataagggttggagcttaattttatctataagttgattgatagaattccccttttgt 31161029  T
Q  349 tggaaaactccagcattc 366  Q
    || ||||||| |||||||    
T  31161030 tgaaaaactctagcattc 31161047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 48825251 - 48825305
Alignment:
Q  63 taaccagaaatttagtctctcaagtacaagaggtgccagagaaaagctaagaaaa 117  Q
    |||||||||| ||||||||||||| |||||||||| ||||||| |||||||||||    
T  48825251 taaccagaaacttagtctctcaagcacaagaggtgtcagagaagagctaagaaaa 48825305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 48989036 - 48988969
Alignment:
Q  235 ttaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttcagccactagaaggattg 302  Q
    |||||| ||||||| ||||||| ||| | ||||||||||||||| ||||||| |||| |||| |||||    
T  48989036 ttaagtcaccatgtatggtaatgaaaagcaaaattaggatgattggccttcaaccaccagaatgattg 48988969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 93 - 329
Target Start/End: Original strand, 35562479 - 35562716
Alignment:
Q  93 aggtgccagagaaaagctaagaaaagtatacgtta-catcaggttaccaacaagaaattaaacattatagccacaaagga-gcacgctaaaacacacaaa 190  Q
    ||||| ||||||| || ||| ||||||||| |||| ||||| ||||||||||||||||||  | ||||||||||| |  | ||||| || || |||||||    
T  35562479 aggtgtcagagaagagttaaaaaaagtatatgttaacatcacgttaccaacaagaaattacgcgttatagccacataacatgcacggtataaaacacaaa 35562578  T
Q  191 aaagagagtgaaactaattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttcagcca 290  Q
    ||| |   ||||||||||||||||||| || ||||||||||| ||||| | || |   |||||||||||| | |||||||||||||||| | |||||||     
T  35562579 aaataatttgaaactaattatgaactctcaaacataaaaggggattaaatcactacacgtggtaattaaaagcaaaattaggatgattttctttcagcc- 35562677  T
Q  291 ctagaaggattggagcttaattttgtccacaagctgatt 329  Q
    |  ||||||||| |||||||||||||||||||| |||||    
T  35562678 ccggaaggattgtagcttaattttgtccacaagttgatt 35562716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 368
Target Start/End: Original strand, 27626109 - 27626286
Alignment:
Q  186 acaaaaaagagagtgaaactaattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttc 285  Q
    |||||||||||| |||| ||||||||||||||||| ||||||||||  |||||| |||||  | || |||||||| | |||||||| |||||||| |||     
T  27626109 acaaaaaagagactgaacctaattatgaactcccaaacataaaaggagattaagctaccacatatgctaattaaaagcaaaattagaatgatttgtctt- 27626207  T
Q  286 agccactagaaggattggagcttaattttgtccacaagctgattaatagaaagccccttttgttggaaaactccagcattcat 368  Q
      |||  ||||  |||| ||||||| ||| || |||||||||||| ||||||  |  ||||||||||||| || |||||||||    
T  27626208 --ccatcagaaatattgtagcttaa-tttatctacaagctgattattagaaa-acatttttgttggaaaattctagcattcat 27626286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 36274880 - 36274932
Alignment:
Q  250 tggtaattaaatgtaaaattaggatgatttgccttcagccactagaaggattg 302  Q
    ||||||||||| | |||| ||||||||| ||||||||| ||| ||||||||||    
T  36274880 tggtaattaaaagcaaaactaggatgatctgccttcagtcaccagaaggattg 36274932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 199 - 358
Target Start/End: Complemental strand, 9145744 - 9145585
Alignment:
Q  199 tgaaactaattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttcagccactagaagg 298  Q
    ||||||||| ||  |||||||| ||||||||| | ||||||  ||||| |||| |||||||| | ||||||||| ||||||||||||| |||| | || |    
T  9145744 tgaaactaagtaacaactcccaaacataaaagaggattaagccaccatttgtgctaattaaaagcaaaattagggtgatttgccttcaaccaccaaaaag 9145645  T
Q  299 attggagcttaattttgtccacaagctgattaatagaaagccccttttgttggaaaactc 358  Q
    |||||||||||||||| || | ||||||||||||||||  |||| |||||||||| ||||    
T  9145644 attggagcttaattttatctagaagctgattaatagaattccccgtttgttggaagactc 9145585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 213 - 314
Target Start/End: Original strand, 26159642 - 26159743
Alignment:
Q  213 aactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttcagccactagaaggattggagcttaatt 312  Q
    ||||| || ||||||||| | ||||||  ||||  |||| ||| |||| | ||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  26159642 aactctcaaacataaaagaggattaagccaccacatgtgataactaaaagcaaaattaggatgatttgtcttcagccactagaaggattgaagcttaatt 26159741  T
Q  313 tt 314  Q
    ||    
T  26159742 tt 26159743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 27001328 - 27001281
Alignment:
Q  267 attaggatgatttgccttcagccactagaaggattggagcttaatttt 314  Q
    |||| ||||||||||||||| ||||||||||| ||| |||||||||||    
T  27001328 attatgatgatttgccttcaaccactagaaggtttgaagcttaatttt 27001281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 358
Target Start/End: Original strand, 13318027 - 13318172
Alignment:
Q  213 aactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttcagccactagaaggattggagcttaatt 312  Q
    |||||||| ||| | ||| | ||||||  ||||||||||||||||||| | |||||||||||||||||||  ||||||| |||| |||||  ||||||||    
T  13318027 aactcccaaacacagaagaggattaagccaccatgtgtggtaattaaaagcaaaattaggatgatttgccaccagccaccagaatgattgttgcttaatt 13318126  T
Q  313 ttgtccacaagctgattaatagaaagccccttttgttggaaaactc 358  Q
    |||||   |||||||| |||||||   || ||||||||||| ||||    
T  13318127 ttgtctttaagctgatgaatagaatttccattttgttggaagactc 13318172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 314
Target Start/End: Complemental strand, 30541975 - 30541914
Alignment:
Q  253 taattaaatgtaaaattaggatgatttgccttcagccactagaaggattggagcttaatttt 314  Q
    |||||||| | |||||||||||||||||  |||| |||| ||||||||||||||||||||||    
T  30541975 taattaaaagcaaaattaggatgatttgttttcaaccacaagaaggattggagcttaatttt 30541914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 36019073 - 36019029
Alignment:
Q  242 accatgtgtggtaattaaatgtaaaattaggatgatttgccttca 286  Q
    |||||||||| |||||||| | ||| |||||||||||||||||||    
T  36019073 accatgtgtgataattaaaagcaaagttaggatgatttgccttca 36019029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 224 - 366
Target Start/End: Complemental strand, 12251018 - 12250876
Alignment:
Q  224 ataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttcagccactagaaggattggagcttaattttgtccacaag 323  Q
    ||||||||| ||||||  ||||  |||| |||||||| | ||||||| |||||||||| |||| ||||||||||||||||||||||| ||| || | |||    
T  12251018 ataaaaggggattaagccaccacatgtgataattaaaagcaaaattatgatgatttgctttcaaccactagaaggattggagcttaactttatctaaaag 12250919  T
Q  324 ctgattaatagaaagccccttttgttggaaaactccagcattc 366  Q
     ||| | || |||  || ||||||||| ||||||| |||||||    
T  12250918 ttgaatgattgaattcctcttttgttgaaaaactctagcattc 12250876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 34703369 - 34703322
Alignment:
Q  267 attaggatgatttgccttcagccactagaaggattggagcttaatttt 314  Q
    |||| ||||||||||||||| ||||||||||| ||| |||||||||||    
T  34703369 attatgatgatttgccttcaaccactagaaggtttgaagcttaatttt 34703322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 67 - 335
Target Start/End: Original strand, 21393735 - 21393997
Alignment:
Q  67 cagaaatttagtctctcaagtacaagaggtgccagagaaaagctaagaaaagtatacgttacatcaggttaccaacaagaaattaaacattatagccaca 166  Q
    |||||| ||||||||||||| | ||||||||||| |||| ||||||||| ||| |  ||||||| |||||||||| |||||| |||   ||| | |||||    
T  21393735 cagaaacttagtctctcaagcataagaggtgccaaagaagagctaagaagagtgtctgttacatgaggttaccaaaaagaaactaagtgttacaaccaca 21393834  T
Q  167 aaggagcacgctaaaacacacaaaaaagagagtgaaact-aattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaa 265  Q
     || ||||||||||||    || |||||||| ||||| | ||  ||||||||||  ||||||||||| ||||||  ||||   ||| || |||||   ||    
T  21393835 gagaagcacgctaaaa---gcacaaaagagattgaaaataaaaaatgaactcccgaacataaaaggggattaagccaccacacgtgatagttaaa---aa 21393928  T
Q  266 aattaggatgatttgccttcagccactagaaggattggagcttaattttgtccacaagctgattaataga 335  Q
    ||  ||| ||||||||||||| |||| |||||||||| ||||||||||  || | ||| |||||||||||    
T  21393929 aaaaagg-tgatttgccttcaaccaccagaaggattgaagcttaatttcatctataagttgattaataga 21393997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 314
Target Start/End: Original strand, 3452247 - 3452319
Alignment:
Q  242 accatgtgtggtaattaaatgtaaaattaggatgatttgccttcagccactagaaggattggagcttaatttt 314  Q
    |||||||||| ||||||||   |||||||||||| |||||||||| ||||||||||||||| |||||||||||    
T  3452247 accatgtgtgataattaaaaacaaaattaggatggtttgccttcaaccactagaaggattgtagcttaatttt 3452319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 336
Target Start/End: Complemental strand, 34257676 - 34257588
Alignment:
Q  248 tgtggtaattaaatgtaaaattaggatgatttgccttcagccactagaaggattggagcttaattttgtccacaagctgattaatagaa 336  Q
    |||| |||||||| ||||| ||||||||||||||||||  |||| |||| || || |||||||||||||| | ||| ||||||||||||    
T  34257676 tgtgataattaaaagtaaagttaggatgatttgccttcgaccaccagaacgactgaagcttaattttgtctataagttgattaatagaa 34257588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 6561153 - 6561210
Alignment:
Q  253 taattaaatgtaaaattaggatgatttgccttcagccactagaaggattggagcttaa 310  Q
    |||||||| | |||||||  |||||||||||||| |||| ||||||||||||||||||    
T  6561153 taattaaaagaaaaattaaaatgatttgccttcaaccaccagaaggattggagcttaa 6561210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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