View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17738_low_14 (Length: 378)
Name: NF17738_low_14
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17738_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 107 - 362
Target Start/End: Original strand, 52243807 - 52244062
Alignment:
| Q |
107 |
agtagtggtatatattggggaatcggtacatgagctagctagctatagtttcaaatgaccatagagagtcattaaagttgctcagtccaatagagacgtt |
206 |
Q |
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| T |
52243807 |
agtagtggtatatattggggaatccgtacatgagctagctagctatagtttcaaatgaccatagagagtcattaaagttgctcagtccaatagagacgtt |
52243906 |
T |
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| Q |
207 |
ggttgaattatgaatcaaaaagtaaatgactaaaagatgaaaattgagtgtattgtttctctgcttgtggttggtccaccaagaattaataactatgacc |
306 |
Q |
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| T |
52243907 |
ggttgaattatgaatcaaaaagtaaatgactaaaagatgaaaattgagtgtattgtttctctgcttgtggttggtccaccaagaattaataactatgacc |
52244006 |
T |
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| Q |
307 |
tactccaacgataatcttgttcatacagcataaatcataactgaacaagaatatgt |
362 |
Q |
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| T |
52244007 |
tactccaacgataatcctgttcatacagcataaatcataactgaacaaaaatatgt |
52244062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 52243713 - 52243759
Alignment:
| Q |
13 |
aaaatacctatgaagaaatccgagttccttctttgttagtatatgaa |
59 |
Q |
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| T |
52243713 |
aaaatacctctgaagaaatccgagttccttctttgttagtatatgaa |
52243759 |
T |
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