View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17738_low_16 (Length: 351)
Name: NF17738_low_16
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17738_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 334
Target Start/End: Original strand, 44871531 - 44871855
Alignment:
| Q |
10 |
attatactcatcttcaatactttccctcttctaccataaccctccaaattcttctccattttaatagtttttaaaacctttagttttttaccactaccca |
109 |
Q |
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| T |
44871531 |
attatactcatcttcaatactttccctcttctaccataaccctccaaattcttctccattttaatagtttttaaaacctttagttttttaccactaccca |
44871630 |
T |
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| Q |
110 |
ccgaatttgtaacttctggttcagattgactcgcatgattctcattttccattgttgttgataccatagtaaccgtagcttttttaacagaactggaaca |
209 |
Q |
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| T |
44871631 |
ccgaatttgtaacttctggttcagattgactcacatgattctcattttccattgttgttgataccatagtaaccgtagcttttttaacagaactggaaca |
44871730 |
T |
|
| Q |
210 |
agaggtttcagaatcctcatcagaagttgattcagaacttgtactagaggcttcagagtcctcatcagaagttgattcatcaaattccaaaggaattgct |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44871731 |
agaggtttcagaatcctcatcagaagttgattcagaacttgtactagaggcttcagagtcctcatcagaagttgattcatcaaattccgaaggaattgct |
44871830 |
T |
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| Q |
310 |
attgcttctgcttcctcctcagatt |
334 |
Q |
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| T |
44871831 |
attgcttctgcttcctcctcagatt |
44871855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 10 - 326
Target Start/End: Complemental strand, 47522748 - 47522432
Alignment:
| Q |
10 |
attatactcatcttcaatactttccctcttctaccataaccctccaaattcttctccattttaatagtttttaaaacctttagttttttaccactaccca |
109 |
Q |
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|||||||| |||| ||||||||||||||||||||| || |||| |||||||||||||| | | ||||||||||||||| | ||||| ||||||| | |
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| T |
47522748 |
attatacttgtctttaatactttccctcttctaccacaatcctctgaattcttctccattaaactcgtttttaaaacctttcctcttttatcactaccta |
47522649 |
T |
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| Q |
110 |
ccgaatttgtaacttctggttcagattgactcgcatgattctcattttccattgttgttgataccatagtaaccgtagcttttttaacagaactggaaca |
209 |
Q |
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|||||| ||| ||||| |||| ||| |||| |||| |||||||||||||||| ||||| |||| || || |||| || |||||| | ||||| |
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| T |
47522648 |
ccgaatcattaagttctgattcaaatttactcacatgcttctcattttccattgatgttggtaccgtacctactatagccttattaacatccccggaact |
47522549 |
T |
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| Q |
210 |
agaggtttcagaatcctcatcagaagttgattcagaacttgtactagaggcttcagagtcctcatcagaagttgattcatcaaattccaaaggaattgct |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||||||||| |||| ||| ||||| | |
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| T |
47522548 |
agaggtttcagaatcctcatcagaagttgattcagaactggcactagaggcttcagaatcgtcatcagaagttgattcatctgattcagaagaaattgat |
47522449 |
T |
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| Q |
310 |
attgcttctgcttcctc |
326 |
Q |
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|||||| |||||||||| |
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| T |
47522448 |
attgctgctgcttcctc |
47522432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 95 - 236
Target Start/End: Complemental strand, 47528287 - 47528146
Alignment:
| Q |
95 |
ttttaccactacccaccgaatttgtaacttctggttcagattgactcgcatgattctcattttccattgttgttgataccatagtaaccgtagctttttt |
194 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||| || |||| |||||||||||| ||| |||||||| |||||||||| |||||||| |
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| T |
47528287 |
ttttaccactacccaccgaattagtaacttctggtttagattgaatcacatgcttctcattttccgttgatgttgataatgtagtaaccgtggctttttt |
47528188 |
T |
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| Q |
195 |
aacagaactggaacaagaggtttcagaatcctcatcagaagt |
236 |
Q |
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||||||| || ||| ||||| |||||||||||||| |||||| |
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| T |
47528187 |
aacagaaatgaaactagaggcttcagaatcctcattagaagt |
47528146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 241
Target Start/End: Complemental strand, 47549971 - 47549819
Alignment:
| Q |
95 |
ttttaccactacccaccgaatttgtaacttctggttcagattgactcgcatgattctcattttccatt---gttg---ttgataccatagtaaccgtagc |
188 |
Q |
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||||||||||| |||| ||||| | |||||||| ||||||||||||| |||| |||||||||||| || |||| |||||||| |||| | ||||| |
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| T |
47549971 |
ttttaccactatccactgaattagaaacttctgattcagattgactcacatgtttctcattttcctttgaagttgatcttgataccgtagttagtgtagc |
47549872 |
T |
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| Q |
189 |
ttttttaacagaactggaacaagaggtttcagaatcctcatcagaagttgatt |
241 |
Q |
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|||||||||||| | ||||| ||||| || |||| ||| | ||||||||||| |
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| T |
47549871 |
ttttttaacagagccggaactagaggctttagaaaccttactagaagttgatt |
47549819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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