View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17738_low_17 (Length: 351)
Name: NF17738_low_17
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17738_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 160 - 333
Target Start/End: Complemental strand, 45637711 - 45637533
Alignment:
| Q |
160 |
ttatttttatttacatgactttaagatcttttttatggtaacataaaacaaaaatataatgaaacaatttatatgcaagctacga-----ctatataaat |
254 |
Q |
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| T |
45637711 |
ttatttttatttacatgacattaagatcttttttatggtaacataaaacaaaaatataatgaaacaatttatatgcaagctacgatacgactatataaat |
45637612 |
T |
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| Q |
255 |
ccaattatgtaaataatcaagtattattgcttaactccatatgattcttagtcacaaccatggttgaaatagtccgaaa |
333 |
Q |
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| T |
45637611 |
ccaattatgtaaataatcaagtattattgtttaattccatatgattcttagtcacaaccatggttgaaatagtccgaaa |
45637533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 45638161 - 45638035
Alignment:
| Q |
19 |
taatatattctatttctaattcttgtcnnnnnnncattctatttcaaatagtttcgggcaagtttattcnnnnnnnnntaatagtttcagacaagttgct |
118 |
Q |
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| T |
45638161 |
taatatattctatttctaattcttgtcaaaaaaacattctatttcaaatagtttcgggcaagtttattcaaaaaaaaaaaaaagtttcagacaagttgct |
45638062 |
T |
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| Q |
119 |
aatcatcttagaactaaagacatcttt |
145 |
Q |
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| T |
45638061 |
aatcatcttagaattaaagacatcttt |
45638035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 45638022 - 45637982
Alignment:
| Q |
128 |
agaactaaagacatctttgaaacaaagattaattattttta |
168 |
Q |
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| T |
45638022 |
agaattaaagacatctttgaaacaaagattaattattttta |
45637982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 45602716 - 45602671
Alignment:
| Q |
174 |
atgactttaagatcttttttatggtaacataaaacaaaaatataat |
219 |
Q |
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| T |
45602716 |
atgacattaagatcctttttatggtaacataaaacagaaatataat |
45602671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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