View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17738_low_18 (Length: 344)
Name: NF17738_low_18
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17738_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 9 - 329
Target Start/End: Original strand, 36363986 - 36364312
Alignment:
| Q |
9 |
gacatcatcaaatgccattgaagcaaaaattggtggtgaagagtgggagtg------agctagctagatagggtgtgagtgagtgaatgaatgaagtgtg |
102 |
Q |
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| T |
36363986 |
gacatcctcaaatgccattgaagcaaaaattggtggttaagagtgggagtgggagtgagctagctagatagggtgtgagtgagtgaatgaatgaagtgtg |
36364085 |
T |
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| Q |
103 |
tgagaagagtgtaaatatatagtggaaaaagtaaagatnnnnnnntgaggacattttgtatataatcttttacagttgggg-gtgtagctaggtgcatta |
201 |
Q |
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| T |
36364086 |
tgagaagagtgtaaatatatagtggaaaaagtaaagataaaaaatt-agtacattttgtatatagtcttttacagttggggggtgtagctaggtgcatta |
36364184 |
T |
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| Q |
202 |
aattgacgcggatataacgtgaaattcaatatcatagccccactaccaccagagtaatcgaatactgttactaccaccacctcattcatatccaatcact |
301 |
Q |
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| T |
36364185 |
aattgacgcggatataacgtgagattcaatatcatagccccactaccaccagagtaatcgaatactgttactaccaccacctcattcatatccaatcact |
36364284 |
T |
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| Q |
302 |
gattactctgactttaatgttcaaattg |
329 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
36364285 |
gattactctgactttaatgttcaaattg |
36364312 |
T |
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