View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17738_low_2 (Length: 676)
Name: NF17738_low_2
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17738_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 326 - 591
Target Start/End: Complemental strand, 6761945 - 6761681
Alignment:
| Q |
326 |
aaaggaaaatcgccggtgacttgtttatcgctatttcgcaaagtaaattcagctagccatgaacctggaaaaactccagtttatcttaatgtgtatgact |
425 |
Q |
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| T |
6761945 |
aaaggaaaatcaccggtgactcgtttttctttatttcgcaaagtaaattcagctagccatggacctggaaaaactccagtttatcttaatgtgtatgact |
6761846 |
T |
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| Q |
426 |
tggtacccatgaatggttatgtgtattgggccggtcttggtatctatcactccagtgtcgaaggtacggttttaggctcgtatggcatcaaatttgctca |
525 |
Q |
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| T |
6761845 |
tgacacccatgaatggttacgtgtattgggccggtcttggtatctatcactctggtgtcgaaggtacggtttt-ggctcgtatgtcttcaaatttaatca |
6761747 |
T |
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| Q |
526 |
tgctctgcctcttaatcttggcatatgacttaaattaacctggctttttctcaaatgtattagaat |
591 |
Q |
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| T |
6761746 |
tgctctgtctcttaatcttggcatatgacttaaattatcctggccttttctcaaatgtattagaat |
6761681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 6752819 - 6752677
Alignment:
| Q |
18 |
acttttaaccagaatcaattcattcaaattctatatttgtctaggcagaatcaaacacacttgtttagtatcgacatgtaaggtcattccgccccccatt |
117 |
Q |
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| T |
6752819 |
acttttaaccagaatcaattcattcaaaatctatatttgtctaggcagaatcaaacacacttgtttagtatcgacgtgtaaggtcatccccccccccatt |
6752720 |
T |
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| Q |
118 |
tgtcgaaatttgaccgcatattcatttgtatttcctgaattat |
160 |
Q |
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| T |
6752719 |
tgtcgaaatttgaccgcatattcatttgtatttcctgaattat |
6752677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 217 - 360
Target Start/End: Complemental strand, 6752643 - 6752502
Alignment:
| Q |
217 |
aatgactgagaatgtgaacattataaataggcgatgctctatcaaacatttgttgaatgcaggtactatgcgagtgtcaccttagggaaagatgaaattg |
316 |
Q |
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| T |
6752643 |
aatgactgagaatgtgaacattataaataggtgatgctctatcaaacatttgttgaatgcaagtactatgtgagtgtcaccttagggaaagatgaaattg |
6752544 |
T |
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| Q |
317 |
aactctaagaaaggaaaatcgccggtgacttgtttatcgctatt |
360 |
Q |
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| T |
6752543 |
aa--ctaagaaaggaaaatcaccggtgacttgtttatcgctatt |
6752502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 21 - 331
Target Start/End: Complemental strand, 6762301 - 6761973
Alignment:
| Q |
21 |
tttaaccagaatcaattcattcaaattctatat--ttgtctaggcagaatcaaacacacttgtttagtatcgacatgtaaggtcattccgcccccc---- |
114 |
Q |
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| T |
6762301 |
tttaaccagaatcaattcattcaaaatctatatatttgtcatcgcagaatcaaacaggcttttttagtatcgacatgtaaggtcttttcttcccccctta |
6762202 |
T |
|
| Q |
115 |
----------atttgtcgaaatttgaccgcatattcatttgtatttcctgaattatctcataagaaggaagtttctgctaattgttttatacaaaacaaa |
204 |
Q |
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| T |
6762201 |
aaaatagttcatttgtcgaaatttgactgcatcttcatttgtatttcctgaatcatc--ataagaaggaagtttctgctaattattttataccaagtaag |
6762104 |
T |
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| Q |
205 |
nnnnnnnnnnnnaatgactgagaatgt-gaacattataaataggcgatgctcta--tcaaacatttgttgaatgcaggtactatgcgagtgt-cacctta |
300 |
Q |
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| T |
6762103 |
ttatttatttttaatgagtgaaaatgttgaacataataaataggtgatcctctaactcaaacatttgttgaatgcaggtactatgtgagtgttcgcctta |
6762004 |
T |
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| Q |
301 |
gggaaagatgaaattgaactctaagaaagga |
331 |
Q |
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| T |
6762003 |
gggaaagatgaaattgaagtctaagaaagga |
6761973 |
T |
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