View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17738_low_20 (Length: 329)

Name: NF17738_low_20
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17738_low_20
NF17738_low_20
[»] chr4 (1 HSPs)
chr4 (1-293)||(38241877-38242169)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 38242169 - 38241877
Alignment:
Q  1 ctgcttcattgcaattgtaatgcaaaagggacttccatttagtatgaaatgtatctgattagagtcctaattgtgagctgatgaagatgctccatttggc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38242169 ctgcttcattgcaattgtaatgcaaaagggacttccatttagtatgaaatgtatctgattagagtcctaattgtgagctgatgaagaagctccatttggc 38242070  T
Q  101 ttgaaaaggaaagctatgcttacgaaaacatacgtcaacggtaaccaattttgccacaatacattgctttaggttatttttgcttaggtccnnnnnnnat 200  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  38242069 ttgaaagggaaagctatgcttacgaaaacatacgtcaacagtaaccaattttgccacaatacattgctttaggttatttttgcttaggtcctttttttat 38241970  T
Q  201 ggtatcagtatggatgtttaatggggccatataagctctacaacgtcattaatggatagaccacaaacctaaatccaaaaatgctatgaggat 293  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38241969 ggtatcagtatggatgtttaatggggccatataagctctaccacgtcattaatggatagaccacaaacctaaatccaaaaatgctatgaggat 38241877  T

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