View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17738_low_22 (Length: 321)
Name: NF17738_low_22
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17738_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 9 - 311
Target Start/End: Complemental strand, 40645911 - 40645609
Alignment:
| Q |
9 |
agcacagaatcaagcaatgttactcgctggtaagacagatgtttgtttcagtatttatttattcatttcaatattggtcctcttttcctttctaagcaaa |
108 |
Q |
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| T |
40645911 |
agcacaaaatcaagcaatgttactcgctggtaagacagatgtttgtttcagtatttatttattcatttcaatattggtcctcctttcctttctaagcaaa |
40645812 |
T |
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| Q |
109 |
caattgacatacgtatgttttttgttttcttcagttgttgctagtttgattgtatattcaagagaaacggtaacagataatcagattcagaatactccaa |
208 |
Q |
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| T |
40645811 |
caattgacatacatatgttttttgttttcttcaggtgttgctagtttgattgtatattcaagagaaacagtaacagataatcagattcagaatactccaa |
40645712 |
T |
|
| Q |
209 |
gtcttgcaaaagtgtggaacgtattggaagttcggattctggttgcccttagtctctacatgcaaatagtactcatctttttgggtaacagaaggaagta |
308 |
Q |
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| T |
40645711 |
gtcttgcaaaagtgtggaacgtattggaagttcggattctggttgcccttagtctctacatgcaaatagtactcatctttttgggtaacagaaggaagta |
40645612 |
T |
|
| Q |
309 |
tat |
311 |
Q |
| |
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||| |
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| T |
40645611 |
tat |
40645609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 311
Target Start/End: Complemental strand, 40654597 - 40654300
Alignment:
| Q |
9 |
agcacagaatcaagcaatgttactcgctggtaagacagatgtttgtttcagtatttatttattcatttcaatattggtcctcttttcctttctaa----- |
103 |
Q |
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|||||| || |||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||| | ||||||| |||||||||||| |
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| T |
40654597 |
agcacaaaagcaagcaatgttactcgctggtaagttggacgtttgtttcagtatttatttattcaattcaacagtggtcctgatttcctttctaaaaagg |
40654498 |
T |
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| Q |
104 |
----gcaaacaattgacatacgtatgttttttgttttcttcagttgttgctagtttgattgtatattcaagagaaacggtaacagataatcagattcaga |
199 |
Q |
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| T |
40654497 |
ctaagaaaaccattgacatagatatgtttttt--------cagttgttttcagtttgatggtatattcaagagaatcaaaatcagataatcaca------ |
40654412 |
T |
|
| Q |
200 |
atactccaagtcttgcaaaagtgtggaacgtattggaagttcggattctggttgcccttagtctctacatgcaaatagtactcatctttttgggtaacag |
299 |
Q |
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||||||||||||| | ||||| |||||| ||||||||| |||||||| |||| || ||||||||| | | ||||| ||||||||||||||||||||| | |
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| T |
40654411 |
atactccaagtctggaaaaagagtggaatgtattggaacttcggattttggtagctgttagtctcttcttacaaatggtactcatctttttgggtaaccg |
40654312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 40655265 - 40655198
Alignment:
| Q |
23 |
caatgttactcgctggtaagacagatgtttgtttcagta-tttatttattcatttcaatattggtcct |
89 |
Q |
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|||||||||| |||||||||| | ||||||||||||| | ||||| |||||| ||||||| ||||||| |
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| T |
40655265 |
caatgttactagctggtaagaaaaatgtttgtttcaggactttatctattcaattcaatagtggtcct |
40655198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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