View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17738_low_24 (Length: 313)

Name: NF17738_low_24
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17738_low_24
NF17738_low_24
[»] chr5 (11 HSPs)
chr5 (1-298)||(13389368-13389665)
chr5 (1-298)||(13385547-13385839)
chr5 (1-121)||(13393775-13393895)
chr5 (28-103)||(13412932-13413007)
chr5 (203-287)||(13393968-13394052)
chr5 (201-290)||(13425982-13426071)
chr5 (1-89)||(13426182-13426270)
chr5 (1-87)||(13373035-13373121)
chr5 (28-89)||(13419291-13419352)
chr5 (28-101)||(13453783-13453856)
chr5 (222-298)||(13453489-13453565)
[»] chr4 (2 HSPs)
chr4 (28-116)||(47601086-47601174)
chr4 (205-298)||(47600904-47600997)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 13389368 - 13389665
Alignment:
Q  1 aaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagagaaagaagcaatagaacacttaggagctgattcatttctgataagtcgtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13389368 aaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagagaaagaagcaatagaacacttaggagccgattcatttctgataagtcgtg 13389467  T
Q  101 accaagagaaaatgcaggtacnnnnnnnnttgttcaattttctattatatggaaattgacaatgctattgctaatcaattcatgaactaattatgttaat 200  Q
    |||||||||||||||||||||        ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13389468 accaagagaaaatgcaggtacaaaaaaaattgttcaattttctattatacagaaattgacaatgctattgctaatcaattcatgaactaattatgttaat 13389567  T
Q  201 gtttttatagtctgcattgggtactttggatggtatcatcgatacagtttcagcaaatcatcctatcttacccctaattggattattgaagtctcatg 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13389568 gtttttatagtctgcattgggtactttggatggtatcatcgatacagtttcagcaaatcatcctatcttacccctaattggattattgaagtctcatg 13389665  T

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Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 13385547 - 13385839
Alignment:
Q  1 aaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagagaaagaagcaatagaacacttaggagctgattcatttctgataagtcgtg 100  Q
    ||||| |||||||| | ||| || || |||||||||||  | | |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||    
T  13385547 aaagcttttggtgctaatgtgaccgtaattagtacatctgctagcaaagaaaaggaagcaaaagaacacttaggagctgattcatttctgataagtcgtg 13385646  T
Q  101 accaagagaaaatgcaggtacnnnnnnnntt-gttcaattttctattatatggaaattgacaatgctattgctaatcaattcatgaactaattatgttaa 199  Q
    ||||||| |||||||||||||         | ||||||| ||||||||||   ||||||||||||||      |||||||||||||| ||||||||||||    
T  13385647 accaagataaaatgcaggtacaaaaaaaaatagttcaatattctattatactcaaattgacaatgct------aatcaattcatgaaataattatgttaa 13385740  T
Q  200 tgtttttatagtctgcattgggtactttggatggtatcatcgatacagtttcagcaaatcatcctatcttacccctaattggattattgaagtctcatg 298  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| |||| || ||| |||||||| ||||||||||||    
T  13385741 tgtttttatagtctgcactgggtactttggatggtatcattgataccgtttcagcaaatcatcctgtcttgccactacttggattactgaagtctcatg 13385839  T

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Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 13393775 - 13393895
Alignment:
Q  1 aaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagagaaagaagcaatagaacacttaggagctgattcatttctgataagtcgtg 100  Q
    ||||| ||||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||| ||    
T  13393775 aaagcttttggagctaatgtaacagtaattagtacatcacccaacaaagagaaagaagcaatagaaaacctaggagctgattcatttcttataagtcatg 13393874  T
Q  101 accaagagaaaatgcaggtac 121  Q
    ||||||| |||||||||||||    
T  13393875 accaagataaaatgcaggtac 13393895  T

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Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 13413007 - 13412932
Alignment:
Q  28 attagtacatcacccaacaaagagaaagaagcaatagaacacttaggagctgattcatttctgataagtcgtgacc 103  Q
    ||||||||||| || |||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13413007 attagtacatcgcctaacaaagaaaaggaagcaatagaacacttaggagctgattcatttctgataagtagtgacc 13412932  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 287
Target Start/End: Original strand, 13393968 - 13394052
Alignment:
Q  203 ttttatagtctgcattgggtactttggatggtatcatcgatacagtttcagcaaatcatcctatcttacccctaattggattatt 287  Q
    |||||||| ||||  |||||||||||||||| ||||||||||||||||||||  |||||||| ||||||| ||| |||| |||||    
T  13393968 ttttataggctgcgatgggtactttggatggcatcatcgatacagtttcagcggatcatcctctcttacctctagttggtttatt 13394052  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 290
Target Start/End: Complemental strand, 13426071 - 13425982
Alignment:
Q  201 gtttttatagtctgcattgggtactttggatggtatcatcgatacagtttcagcaaatcatcctatcttacccctaattggattattgaa 290  Q
    ||||| |||| ||||| ||||||||||| ||||||| ||||| || ||||| |||| |||||||||||||||  | ||||| ||||||||    
T  13426071 gttttaataggctgcaatgggtactttgaatggtattatcgacactgtttcggcaagtcatcctatcttaccattgattggtttattgaa 13425982  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 13426270 - 13426182
Alignment:
Q  1 aaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagagaaagaagcaatagaacacttaggagctgattcatttct 89  Q
    ||||| |||||||| | ||||||||| ||||||||||| || | |||||| || ||||| |||||||| ||||||||||| || |||||    
T  13426270 aaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaagcgatagaacatttaggagctgactcgtttct 13426182  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 13373121 - 13373035
Alignment:
Q  1 aaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagagaaagaagcaatagaacacttaggagctgattcattt 87  Q
    ||||| |||||||| | |||||||||||| || || || || |||||| |||| ||||| || ||||||||||||||||| ||||||    
T  13373121 aaagcttttggtgctaatgtaacagtgataagcacttctcctaacaaaaagaaggaagccattgaacacttaggagctgactcattt 13373035  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 13419352 - 13419291
Alignment:
Q  28 attagtacatcacccaacaaagagaaagaagcaatagaacacttaggagctgattcatttct 89  Q
    ||||||||||| ||  ||||||| || ||||||||||||||||| |||||||| || |||||    
T  13419352 attagtacatcgcctcacaaagaaaaggaagcaatagaacacttgggagctgactcgtttct 13419291  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 13453856 - 13453783
Alignment:
Q  28 attagtacatcacccaacaaagagaaagaagcaatagaacacttaggagctgattcatttctgataagtcgtga 101  Q
    |||||||||||||| || || || || |||||| ||||||||||| |||| || |||||||| ||||| |||||    
T  13453856 attagtacatcacctaaaaaggaaaaggaagcattagaacacttacgagcggactcatttctaataagccgtga 13453783  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 298
Target Start/End: Complemental strand, 13453565 - 13453489
Alignment:
Q  222 tactttggatggtatcatcgatacagtttcagcaaatcatcctatcttacccctaattggattattgaagtctcatg 298  Q
    ||||||||||||||| ||||| |||||||||||  |||||||  | ||||| || ||||| ||| | ||||||||||    
T  13453565 tactttggatggtattatcgacacagtttcagcggatcatccgctattacctctgattggtttactcaagtctcatg 13453489  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 47601174 - 47601086
Alignment:
Q  28 attagtacatcacccaacaaagagaaagaagcaatagaacacttaggagctgattcatttctgataagtcgtgaccaagagaaaatgca 116  Q
    |||||||||||||| |||||||| |||||||||| ||||  |||||||||||| |||||| ||||||||||||||||||| || |||||    
T  47601174 attagtacatcacctaacaaagaaaaagaagcaagagaatgcttaggagctgactcatttttgataagtcgtgaccaagataagatgca 47601086  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 47600997 - 47600904
Alignment:
Q  205 ttatagtctgcattgggtactttggatggtatcatcgatacagtttcagcaaatcatcctatcttacccctaattggattattgaagtctcatg 298  Q
    |||||| ||||| ||  |||||||||||||||||| || |||||||||||  | |||||| ||| ||| |||||||||||| ||||||||||||    
T  47600997 ttataggctgcagtgaatactttggatggtatcattgacacagtttcagctgaacatcctctctcacctctaattggattactgaagtctcatg 47600904  T

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