View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17738_low_27 (Length: 294)
Name: NF17738_low_27
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17738_low_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 7352674 - 7352954
Alignment:
| Q |
14 |
caaagggaccatggcatttacatcaaattatcataatgatacaaacaaattttagtcactactcactagtcaattgaagtaggccaatgcaacaatttat |
113 |
Q |
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| T |
7352674 |
caaagggaccatggcatttacatcaaattatcataatgatacaaacaaattttagtcactactcactagtcaattgaagtaggccaatgcaacaatttat |
7352773 |
T |
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| Q |
114 |
tttcaagcataataaaaacatgaaaaccgataaaggataaatgtattattattattcatgatcttcatctagtacttcaagcagtagcaacagttgcatc |
213 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7352774 |
tttcaagcataataaaaacatgaaaaccgacaaaggataaatgtaatattattattcatgatcttcatctaatacttcaagcagtagcaacagttgcatc |
7352873 |
T |
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| Q |
214 |
cttatgcttggtgattgcattttccagctcttccttcctagcaccaactaccttatccacttccttaccttctttcaagaa |
294 |
Q |
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| T |
7352874 |
cttatgcttggtgattgcattttccagctcttccttcctagcaccgactaccttatccacttccttaccttctttcaagaa |
7352954 |
T |
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