View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17738_low_29 (Length: 281)
Name: NF17738_low_29
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17738_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 48585783 - 48585522
Alignment:
| Q |
1 |
caaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatggtttaccagac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48585783 |
caaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttcgctttcgagttctttgatgatggtttaccagac |
48585684 |
T |
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| Q |
101 |
ggtgatcgttcagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaattatcaagaatcatgctgatttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48585683 |
ggtgatcgttcagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaatgatcaagaatcatgctgatttaa |
48585584 |
T |
|
| Q |
201 |
acaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaat |
262 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48585583 |
acaaaccattttcatgtatcataaacaattatttttttccatgggtttgtgatgttgctaat |
48585522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 48640356 - 48640095
Alignment:
| Q |
1 |
caaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatggtttaccagac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
48640356 |
caaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttcgctttcgagttctttgacgatggtttaccagat |
48640257 |
T |
|
| Q |
101 |
ggtgatcgttcagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaattatcaagaatcatgctgatttaa |
200 |
Q |
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|| | |||| |||||||||||||||||||||| |||||||||||||||||||| |||| || |||||| ||||| || ||||||||||| |||| || |
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| T |
48640256 |
ggcagtggttcggccttcagagctcttcagcactatgctgaaattgaggttgctggcagacactttatttcacaaatgataaagaatcatgccgattcaa |
48640157 |
T |
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| Q |
201 |
acaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaat |
262 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||| ||||||||| |
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| T |
48640156 |
acaaaccattttcatgtatcataaacaactatttttttccatgggtttgtgacgttgctaat |
48640095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 48618046 - 48618107
Alignment:
| Q |
168 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaat |
229 |
Q |
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| T |
48618046 |
tttctcaaatgatcaagaatcatgctgattcaaacaaaccattttcatgtatcataaacaat |
48618107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 48661841 - 48661780
Alignment:
| Q |
168 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaat |
229 |
Q |
| |
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|||||||||| ||||||||||||||||||| |||||||||| |||||||| ||||||||||| |
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| T |
48661841 |
tttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaat |
48661780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 48667438 - 48667376
Alignment:
| Q |
166 |
tatttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaa |
228 |
Q |
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|||||||||||| || |||||||||||||||| ||||||||| |||||||||| |||||||| |
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| T |
48667438 |
tatttctcaaatgataaagaatcatgctgattcgaacaaaccaatttcatgtattataaacaa |
48667376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 48653409 - 48653352
Alignment:
| Q |
168 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaa |
225 |
Q |
| |
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|||||||||| ||||||||||||||||| | |||||||||| |||||||| ||||||| |
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| T |
48653409 |
tttctcaaatgatcaagaatcatgctgagtcaaacaaaccaatttcatgtctcataaa |
48653352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 11547518 - 11547459
Alignment:
| Q |
170 |
tctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaat |
229 |
Q |
| |
|
|||||||| ||||||||||||| ||| | |||||||||| |||| ||||||||||||||| |
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| T |
11547518 |
tctcaaatgatcaagaatcatgttgagtcaaacaaaccaatttcttgtatcataaacaat |
11547459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 48629155 - 48629094
Alignment:
| Q |
168 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaat |
229 |
Q |
| |
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||||| |||| ||||||||||||||||||| || |||||| |||||||||||||| ||||| |
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| T |
48629155 |
tttctaaaatgatcaagaatcatgctgattcaagtaaaccaatttcatgtatcatatacaat |
48629094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 48653558 - 48653483
Alignment:
| Q |
19 |
taacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatggttta |
94 |
Q |
| |
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||||||||||||||| |||| | |||||||||||||||||| | || |||| ||||||||||||||| ||||| |
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| T |
48653558 |
taacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagttctttgatgattgttta |
48653483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 48661958 - 48661896
Alignment:
| Q |
33 |
acaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatggtttac |
95 |
Q |
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|||||||||||||||| || ||||||||| || || |||||||||||||||| || |||||| |
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| T |
48661958 |
acaaattagcaactccgataggtgatggttctctcattttcgagttctttgatcatagtttac |
48661896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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