View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17738_low_3 (Length: 663)

Name: NF17738_low_3
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17738_low_3
NF17738_low_3
[»] chr7 (2 HSPs)
chr7 (12-650)||(30023718-30024342)
chr7 (265-319)||(48582197-48582252)
[»] chr8 (1 HSPs)
chr8 (150-233)||(35841593-35841676)
[»] scaffold0318 (1 HSPs)
scaffold0318 (265-409)||(2083-2234)
[»] chr6 (1 HSPs)
chr6 (370-409)||(26171849-26171888)
[»] scaffold0085 (1 HSPs)
scaffold0085 (265-302)||(47178-47215)
[»] chr5 (1 HSPs)
chr5 (265-302)||(25760434-25760471)
[»] chr3 (2 HSPs)
chr3 (369-402)||(14477333-14477366)
chr3 (252-319)||(42450577-42450645)
[»] chr2 (1 HSPs)
chr2 (265-294)||(9538586-9538615)
[»] chr4 (1 HSPs)
chr4 (322-406)||(4965378-4965462)
[»] chr1 (1 HSPs)
chr1 (342-402)||(38041147-38041206)


Alignment Details
Target: chr7 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 12 - 650
Target Start/End: Complemental strand, 30024342 - 30023718
Alignment:
Q  12 agagacactaacgcaattagcacgagaaaagcatgctttgagttcgagaatgttccatgccgaagttgcagtatcaaaataattaagaggcctgccgaca 111  Q
    |||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30024342 agagacactaacgcaattagcacgagaaaagcatgctttgagtttgatattgttccatgccgaagttgcagtatcaaaataattaagaggcctgccgaca 30024243  T
Q  112 taaatgtttgggttattattgtgatgcatacacacatcacacatgtaatataatttcataattcagcaagctattgttgccagcacatctgtttgaatat 211  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30024242 taaatgtttgggttattattgtgatgca--cacacatgacacatgtaatataatttcataattcagcaagctattgttgccagcacatctgtttgaatat 30024145  T
Q  212 ttggcaccgtttccctatggca-aagtgtagcacatttataaaagaaaacaaaggtgagttaactcacgctggagttcagtgtgaattttcagcgagact 310  Q
    |||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||| |||||| |||||||||||| |||||||    
T  30024144 ttggcaccgtttccctatggcataagtgtagcacatgtataagagaaaacaaaggtaagttaactcacgctgaagttcaatgtgaattttcaacgagact 30024045  T
Q  311 taagtcacgagttaagtcacgctgagtttatcacatgcatgattttactcacgtcataagcattttcgaaagtttggttggaagtgagcaaattttgttt 410  Q
    |||||||||             |||||||||||||||| |||||||||||||||||| |||||||| |||| ||| |||||||||||| ||||||| ||     
T  30024044 taagtcacgt------------tgagtttatcacatgcgtgattttactcacgtcatgagcatttttgaaaatttagttggaagtgagtaaattttatta 30023957  T
Q  411 gagcatttttctcacgaatcatcatccataagaattgcacaacaaatcactaagcttagtatggatacaactttttatgatcataagaattttatgatac 510  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  30023956 gagcgtttttctcacgaatcatcatccataagaattgcacaacaaatcactaagcttagtatggatacaaccttttatgatcataacaattttatgatac 30023857  T
Q  511 taggtatttgtatgcgaaatgatgggcaaag--cgagttgtgtgtgtgaagccgaaactatagtctatggcattccattcattgcgccaaggaatatcat 608  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30023856 taggtatttgtatgcgaaatgatgggcaaagcacgagttgtgtgtgtgaagccgaaactatagtctatggcattccattcatcgcgccaaggaatatcat 30023757  T
Q  609 ctcatcaccaatgtgatttttcagttctgtaagttagtaggt 650  Q
    |   ||||||||||||||||| ||||||||||||||||||||    
T  30023756 c---tcaccaatgtgattttttagttctgtaagttagtaggt 30023718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 265 - 319
Target Start/End: Complemental strand, 48582252 - 48582197
Alignment:
Q  265 gtgagttaactcacgctggag-ttcagtgtgaattttcagcgagacttaagtcacg 319  Q
    ||||||||||||||||||| | |||||||||||||||||||| |||||||||||||    
T  48582252 gtgagttaactcacgctgggggttcagtgtgaattttcagcgtgacttaagtcacg 48582197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 35841676 - 35841593
Alignment:
Q  150 acacatgtaatataatttcataattcagcaagctattgttgccagcacatctgtttgaatatttggcaccgtttccctatggca 233  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||    
T  35841676 acacatgtaatttaatttcataattcagcaagctattgttgccagcacatctatttgaatagttggcaccgttttcctatggca 35841593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 265 - 409
Target Start/End: Original strand, 2083 - 2234
Alignment:
Q  265 gtgagttaactcacgctggagttcagtgtgaattttcagcgagacttaagtcac-------gagttaagtcacgctgagtttatcacatgcatgatttta 357  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||| |||       ||||||| ||||  |||||||| ||||||| ||| || |    
T  2083 gtgagttaactcatgctggagttcagtgtgaattttcagcgtgacttaagccacgctgcgtgagttaaatcacattgagtttaacacatgcgtgacttaa 2182  T
Q  358 ctcacgtcataagcattttcgaaagtttggttggaagtgagcaaattttgtt 409  Q
    |  |||| ||  | ||||||| |||||||||||| ||||||||||| |||||    
T  2183 cctacgttatgggtattttcggaagtttggttgggagtgagcaaatcttgtt 2234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 409
Target Start/End: Original strand, 26171849 - 26171888
Alignment:
Q  370 gcattttcgaaagtttggttggaagtgagcaaattttgtt 409  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  26171849 gcattttcgaaagtttggttaggagtgagcaaattttgtt 26171888  T

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Target: scaffold0085 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 47178 - 47215
Alignment:
Q  265 gtgagttaactcacgctggagttcagtgtgaattttca 302  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  47178 gtgagttaactcacgttggatttcagtgtgaattttca 47215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 25760434 - 25760471
Alignment:
Q  265 gtgagttaactcacgctggagttcagtgtgaattttca 302  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  25760434 gtgagttaactcacgttggatttcagtgtgaattttca 25760471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 14477333 - 14477366
Alignment:
Q  369 agcattttcgaaagtttggttggaagtgagcaaa 402  Q
    ||||||||||||||||||||||||| ||||||||    
T  14477333 agcattttcgaaagtttggttggaaatgagcaaa 14477366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 252 - 319
Target Start/End: Complemental strand, 42450645 - 42450577
Alignment:
Q  252 aaagaaaacaaaggtgagttaactcacgctggag-ttcagtgtgaattttcagcgagacttaagtcacg 319  Q
    ||||||||| |  ||||||||||||| | ||| | |||||||||||||||||||| || ||||||||||    
T  42450645 aaagaaaactagcgtgagttaactcatgttgggggttcagtgtgaattttcagcgtgatttaagtcacg 42450577  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 294
Target Start/End: Complemental strand, 9538615 - 9538586
Alignment:
Q  265 gtgagttaactcacgctggagttcagtgtg 294  Q
    ||||||||||||||||||||||||||||||    
T  9538615 gtgagttaactcacgctggagttcagtgtg 9538586  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 322 - 406
Target Start/End: Original strand, 4965378 - 4965462
Alignment:
Q  322 ttaagtcacgctgagtttatcacatgcatgattttactcacgtcataagcattttcgaaagtttggttggaagtgagcaaatttt 406  Q
    |||| ||||| |||||||| ||||||| ||| || ||| ||||||   | ||||| ||||||||| ||| |||||||||||||||    
T  4965378 ttaaatcacgttgagtttaacacatgcgtgacttaacttacgtcacgggtatttttgaaagtttgattgaaagtgagcaaatttt 4965462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 342 - 402
Target Start/End: Complemental strand, 38041206 - 38041147
Alignment:
Q  342 cacatgcatgattttactcacgtcataagcattttcgaaagtttggttggaagtgagcaaa 402  Q
    ||||||| ||| || ||||||| ||| ||||||||| ||||||||||||||| ||||||||    
T  38041206 cacatgcgtgaattaactcacg-catgagcattttcaaaagtttggttggaaatgagcaaa 38041147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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