View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17738_low_31 (Length: 253)
Name: NF17738_low_31
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17738_low_31 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 253
Target Start/End: Original strand, 25173396 - 25173644
Alignment:
| Q |
6 |
aatattaatcaaatacgtatcttcgttgttatttgcaaggactagaatgacattaagttggtaatatcgaagatgaatttgaaactaatttgttatgaat |
105 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25173396 |
aatattaatcaaatccgtctcttcgttgttatttgcaaggactagaatgacattaagttggtaatatcgaagatgaatttgaaactaagttgttatgaat |
25173495 |
T |
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| Q |
106 |
tctaacataaatctcaccctaataaaccacaagcaaaagataaagggagnnnnnnnnnnnntctccacttcactgtcaatgagttctaccattttcccaa |
205 |
Q |
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| T |
25173496 |
tctaacttaaatctcaccccaataaaccacaagcaaaagataaagggaggagagagagagatctccacttcactgtcaatgagttctaccattttcccaa |
25173595 |
T |
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| Q |
206 |
atctctacctatgagcaagcacccaag-acaaacctaatttctaccctt |
253 |
Q |
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| T |
25173596 |
atctctacctatgagcaagcacccaagaacaaacctaatttctaccctt |
25173644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 5043183 - 5043222
Alignment:
| Q |
35 |
tatttgcaaggactagaatgacattaagttggtaatatcg |
74 |
Q |
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| T |
5043183 |
tatttgcaaaaactagaatgacattaagttggtaatatcg |
5043222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 21873651 - 21873593
Alignment:
| Q |
35 |
tatttgcaaggactagaatgacattaagttggtaatatcgaagatgaatttgaaactaa |
93 |
Q |
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| T |
21873651 |
tatttgtagggactagaatgacattaaattggtaatatcagggatgaattggaaactaa |
21873593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 6983384 - 6983347
Alignment:
| Q |
52 |
atgacattaagttggtaatatcgaagatgaatttgaaa |
89 |
Q |
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| T |
6983384 |
atgacattaagttggtaatataggagatgaatttgaaa |
6983347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 3457937 - 3457981
Alignment:
| Q |
45 |
gactagaatgacattaagttggtaatatcgaagatgaatttgaaa |
89 |
Q |
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| T |
3457937 |
gactagaatgatattaagttggtaatatcgaagatgaatttgaaa |
3457981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 29841947 - 29841888
Alignment:
| Q |
29 |
cgttgttatttgcaaggactagaatgacattaagttggtaatatcgaagatgaatttgaaa |
89 |
Q |
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| T |
29841947 |
cgttggtatttgtagggactagaatgacattaagttgataa-atcggggatgaatttgaaa |
29841888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 34620649 - 34620587
Alignment:
| Q |
30 |
gttgttatttgcaaggactagaatgacattaagttggtaatatcgaagatgaatttgaaactaa |
93 |
Q |
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| T |
34620649 |
gttggtatttgtaaggactagaatgacattaaattggtactatag-agatgaatttgaaactaa |
34620587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 34748086 - 34748024
Alignment:
| Q |
30 |
gttgttatttgcaaggactagaatgacattaagttggtaatatcgaagatgaatttgaaactaa |
93 |
Q |
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| T |
34748086 |
gttggtatttgtaaggactagaatgacattaaattggtactatag-agatgaatttgaaactaa |
34748024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 47892697 - 47892740
Alignment:
| Q |
30 |
gttgttatttgcaaggactagaatgacattaagttggtaatatc |
73 |
Q |
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| T |
47892697 |
gttgttatttgtagggactagaatgacattaagttggtaatatc |
47892740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 4326951 - 4327008
Alignment:
| Q |
35 |
tatttgcaaggactagaatgacattaagttggtaatatcgaagatgaatttgaaacta |
92 |
Q |
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|||||||||||| || ||||| |||||||||||||| | ||| ||| ||||||||||| |
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| T |
4326951 |
tatttgcaaggagtataatgatattaagttggtaatgttgaaaatgcatttgaaacta |
4327008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 16827399 - 16827337
Alignment:
| Q |
30 |
gttgttatttgcaaggactagaatgacattaagttggtaatatcgaagatgaatttgaaactaa |
93 |
Q |
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|||| |||||||| ||||||||||||||||||||| ||||| || |||||||||||||||||| |
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| T |
16827399 |
gttgatatttgca-ggactagaatgacattaagtttgtaatctccgagatgaatttgaaactaa |
16827337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 27717284 - 27717234
Alignment:
| Q |
44 |
ggactagaatgac-attaagttggtaatatcgaagatgaatttgaaactaa |
93 |
Q |
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| T |
27717284 |
ggactagaatgaccattaagtttgtaatatcagagatgaatttgaaactaa |
27717234 |
T |
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