View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17738_low_33 (Length: 243)
Name: NF17738_low_33
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17738_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 81 - 225
Target Start/End: Original strand, 50128919 - 50129063
Alignment:
| Q |
81 |
catttaaatctttaatttataatcccattttaaccataaaattcacactaaactcataatgcttcatgaattttcaagggaaaaacactgtctggaacaa |
180 |
Q |
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| T |
50128919 |
catttaaatctttaatttataatcccattttaaccataaaattcacactaaactcataatgcttcatgaattttcaagggaaaaacactgtctagaacaa |
50129018 |
T |
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| Q |
181 |
actaagccagaggaaggaccaaagccaacatatcctggtgtagac |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50129019 |
actaagccagaggaaggaccaaagccaacatatcctggtgtagac |
50129063 |
T |
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