View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17738_low_36 (Length: 226)

Name: NF17738_low_36
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17738_low_36
NF17738_low_36
[»] chr1 (9 HSPs)
chr1 (1-220)||(24352687-24352907)
chr1 (1-220)||(24340322-24340542)
chr1 (4-138)||(24367144-24367278)
chr1 (12-76)||(24415834-24415898)
chr1 (89-139)||(24369476-24369526)
chr1 (9-66)||(24322835-24322892)
chr1 (93-205)||(24310097-24310213)
chr1 (4-71)||(24310265-24310332)
chr1 (93-134)||(24322463-24322504)
[»] chr4 (13 HSPs)
chr4 (1-77)||(49041081-49041157)
chr4 (91-138)||(48147754-48147801)
chr4 (91-137)||(48705396-48705442)
chr4 (91-135)||(7908325-7908369)
chr4 (94-137)||(7237763-7237806)
chr4 (94-137)||(7771396-7771439)
chr4 (94-137)||(7790081-7790124)
chr4 (91-138)||(48735419-48735466)
chr4 (91-138)||(50250818-50250865)
chr4 (91-137)||(7877727-7877773)
chr4 (89-138)||(45372107-45372156)
chr4 (85-142)||(48902925-48902982)
chr4 (89-138)||(49041199-49041248)
[»] chr5 (3 HSPs)
chr5 (91-138)||(29696203-29696250)
chr5 (86-138)||(179031-179083)
chr5 (33-68)||(29712421-29712456)
[»] chr8 (2 HSPs)
chr8 (93-138)||(12200304-12200349)
chr8 (93-138)||(12444732-12444777)
[»] chr3 (3 HSPs)
chr3 (89-138)||(11005988-11006037)
chr3 (89-138)||(11024563-11024612)
chr3 (93-142)||(47451946-47451995)
[»] chr6 (1 HSPs)
chr6 (94-138)||(21979678-21979722)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 24352907 - 24352687
Alignment:
Q  1 cttactacaaaaaggcaaatgggtagggctcacaatttcgttccacgcattagctctcaatgagaaaatccccaagtaaacatatgaaactgaaaccacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24352907 cttactacaaaaaggcaaatgggtagggctcacaatttcgttccacgcattagctctcaatgagaaaatccccaagtaaacatatgaaactgaaaccacc 24352808  T
Q  101 aagtaatcatctgttgactcgtcatatccaaaaccataaaaaactaaatgtgaaacactaggagggaaaggtattt-tctataaaatccggtggatgggt 199  Q
    |||||||||| |||||| |||||||| |||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||  ||||||||||||||| |    
T  24352807 aagtaatcatatgttgattcgtcatacccaaaaccataaaaaattaaatttgaaacattaggagggaaaggtatttgtctaagaaatccggtggatggat 24352708  T
Q  200 tccatatataagcttttgaac 220  Q
    ||||||||||||||| |||||    
T  24352707 tccatatataagcttctgaac 24352687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 24340542 - 24340322
Alignment:
Q  1 cttactacaaaaaggcaaatgggtagggctcacaatttcgttccacgcattagctctcaatgagaaaatccccaagtaaacatatgaaactgaaaccacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24340542 cttactacaaaaaggcaaatgggtagggctcacaatttcgttccacgcattagctctcaatgagaaaatccccaagtaaacatattaaactgaaaccacc 24340443  T
Q  101 aagtaatcatctgttgactcgtcatatccaaaaccataaaaaactaaatgtgaaacactaggagggaaaggtattt-tctataaaatccggtggatgggt 199  Q
    |||||||||| |||||| |||||||| |||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||  ||||||||||||||| |    
T  24340442 aagtaatcatatgttgattcgtcatacccaaaaccataaaaaattaaatttgaaacattaggagggaaaggtatttgtctaagaaatccggtggatggat 24340343  T
Q  200 tccatatataagcttttgaac 220  Q
    ||||||||||||||| |||||    
T  24340342 tccatatataagcttctgaac 24340322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 24367278 - 24367144
Alignment:
Q  4 actacaaaaaggcaaatgggtagggctcacaatttcgttccacgcattagctctcaatgagaaaatccccaagtaaacatatgaaactgaaaccaccaag 103  Q
    ||||||||||| |||||||||||  | |||| |||| ||||||||||||||||||||||||||||||||||||||| |||| || |  ||||||||||||    
T  24367278 actacaaaaagccaaatgggtagtacccacagtttcattccacgcattagctctcaatgagaaaatccccaagtaatcataggataacgaaaccaccaag 24367179  T
Q  104 taatcatctgttgactcgtcatatccaaaaccata 138  Q
    |||||||||||||||| |||||| |||||||||||    
T  24367178 taatcatctgttgacttgtcatacccaaaaccata 24367144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 24415898 - 24415834
Alignment:
Q  12 aaggcaaatgggtagggctcacaatttcgttccacgcattagctctcaatgagaaaatccccaag 76  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||    
T  24415898 aaggcaaatgggtaggactcacaatttcgttccacacattagctctcaatgagaaaatcctcaag 24415834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 24369526 - 24369476
Alignment:
Q  89 actgaaaccaccaagtaatcatctgttgactcgtcatatccaaaaccataa 139  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  24369526 actgaaaccaccaggtaatcatctgttgactcgtcatagccaaaaccataa 24369476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 24322892 - 24322835
Alignment:
Q  9 aaaaaggcaaatgggtagggctcacaatttcgttccacgcattagctctcaatgagaa 66  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||||||||| |||||    
T  24322892 aaaaaggcaaatgtgtaggacccacaatttcgttccacgcattagctctcaaagagaa 24322835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 24310213 - 24310097
Alignment:
Q  93 aaaccaccaagtaatcatctgttgactcgtcatatccaaaaccataaaaaactaaatgtgaaacact---aggagggaaaggtattt-tctataaaatcc 188  Q
    |||| ||||||||||||||| ||||||||||||| ||||||||||| |||  |||| |||||  | |   ||||||  ||||||||| ||||| || |||    
T  24310213 aaactaccaagtaatcatctcttgactcgtcataaccaaaaccatagaaatttaaacgtgaataattgggaggaggcgaaggtatttgtctatgaactcc 24310114  T
Q  189 ggtggatgggttccata 205  Q
    ||||||||| |||||||    
T  24310113 ggtggatggattccata 24310097  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 24310332 - 24310265
Alignment:
Q  4 actacaaaaaggcaaatgggtagggctcacaatttcgttccacgcattagctctcaatgagaaaatcc 71  Q
    |||| ||||||| ||||| | ||| |||||||||||||| ||| |||||||||||| ||| |||||||    
T  24310332 actataaaaaggtaaatgtgcaggactcacaatttcgttgcacacattagctctcattgaaaaaatcc 24310265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 24322504 - 24322463
Alignment:
Q  93 aaaccaccaagtaatcatctgttgactcgtcatatccaaaac 134  Q
    |||| ||||||||||| ||| |||||||||||||||||||||    
T  24322504 aaactaccaagtaatcctctcttgactcgtcatatccaaaac 24322463  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 49041081 - 49041157
Alignment:
Q  1 cttactacaaaaaggcaaatgggtagggctcacaatttcgttccacgcattagctctcaatgagaaaatccccaagt 77  Q
    |||||||||||||||| ||||| |||  | ||||||||| |||||| |||||||| |||||||||||||| ||||||    
T  49041081 cttactacaaaaaggccaatggatagtacccacaatttccttccacacattagctttcaatgagaaaatctccaagt 49041157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 48147754 - 48147801
Alignment:
Q  91 tgaaaccaccaagtaatcatctgttgactcgtcatatccaaaaccata 138  Q
    ||||||||||||||||||||||||| ||| |||||| |||||||||||    
T  48147754 tgaaaccaccaagtaatcatctgttaactggtcatacccaaaaccata 48147801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 48705396 - 48705442
Alignment:
Q  91 tgaaaccaccaagtaatcatctgttgactcgtcatatccaaaaccat 137  Q
    |||||| ||||||||||||||||||||||  ||||||||||||||||    
T  48705396 tgaaacaaccaagtaatcatctgttgactgatcatatccaaaaccat 48705442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 7908369 - 7908325
Alignment:
Q  91 tgaaaccaccaagtaatcatctgttgactcgtcatatccaaaacc 135  Q
    |||||||||||||||||||||| |||||| |||||| ||||||||    
T  7908369 tgaaaccaccaagtaatcatctcttgactggtcataaccaaaacc 7908325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 7237763 - 7237806
Alignment:
Q  94 aaccaccaagtaatcatctgttgactcgtcatatccaaaaccat 137  Q
    ||||||||||||||||||| |||||| |||||| ||||||||||    
T  7237763 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7237806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 7771439 - 7771396
Alignment:
Q  94 aaccaccaagtaatcatctgttgactcgtcatatccaaaaccat 137  Q
    ||||||||||||||||||| |||||| |||||| ||||||||||    
T  7771439 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7771396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 7790124 - 7790081
Alignment:
Q  94 aaccaccaagtaatcatctgttgactcgtcatatccaaaaccat 137  Q
    ||||||||||||||||||| |||||| |||||| ||||||||||    
T  7790124 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7790081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 48735419 - 48735466
Alignment:
Q  91 tgaaaccaccaagtaatcatctgttgactcgtcatatccaaaaccata 138  Q
    ||||||||||||||||||||||||| | | |||||| |||||||||||    
T  48735419 tgaaaccaccaagtaatcatctgttaaatggtcatacccaaaaccata 48735466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 50250818 - 50250865
Alignment:
Q  91 tgaaaccaccaagtaatcatctgttgactcgtcatatccaaaaccata 138  Q
    |||||||||||| |||||||||||||| | |||||| |||||||||||    
T  50250818 tgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 50250865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 7877773 - 7877727
Alignment:
Q  91 tgaaaccaccaagtaatcatctgttgactcgtcatatccaaaaccat 137  Q
    |||||||||||||||||||||| |||| | |||||| ||||||||||    
T  7877773 tgaaaccaccaagtaatcatctcttgattggtcataaccaaaaccat 7877727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 45372107 - 45372156
Alignment:
Q  89 actgaaaccaccaagtaatcatctgttgactcgtcatatccaaaaccata 138  Q
    |||||||||||||||||||||||| || |||| ||||| ||||| |||||    
T  45372107 actgaaaccaccaagtaatcatctcttaactcatcatacccaaatccata 45372156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 48902982 - 48902925
Alignment:
Q  85 tgaaactgaaaccaccaagtaatcatctgttgactcgtcatatccaaaaccataaaaa 142  Q
    ||||| ||| |||| ||||||||||||| |||| | |||||| |||||||||||||||    
T  48902982 tgaaattgataccatcaagtaatcatctcttgagtggtcatacccaaaaccataaaaa 48902925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 49041199 - 49041248
Alignment:
Q  89 actgaaaccaccaagtaatcatctgttgactcgtcatatccaaaaccata 138  Q
    |||||||||| |||||||||||||||||||   ||||| |||||||||||    
T  49041199 actgaaaccatcaagtaatcatctgttgacggatcatacccaaaaccata 49041248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 29696250 - 29696203
Alignment:
Q  91 tgaaaccaccaagtaatcatctgttgactcgtcatatccaaaaccata 138  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||    
T  29696250 tgaaatcaccaagtaatcatctgttgactcgtcatacccaaaaccata 29696203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 179083 - 179031
Alignment:
Q  86 gaaactgaaaccaccaagtaatcatctgttgactcgtcatatccaaaaccata 138  Q
    |||| ||| |||| ||||||||||||||||||||| ||||| |||||||||||    
T  179083 gaaattgacaccaacaagtaatcatctgttgactcctcatacccaaaaccata 179031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 29712421 - 29712456
Alignment:
Q  33 caatttcgttccacgcattagctctcaatgagaaaa 68  Q
    |||||||||||||||||| |||||||||||||||||    
T  29712421 caatttcgttccacgcatcagctctcaatgagaaaa 29712456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 12200349 - 12200304
Alignment:
Q  93 aaaccaccaagtaatcatctgttgactcgtcatatccaaaaccata 138  Q
    |||||||||||||||||||| |||||  |||||| |||||||||||    
T  12200349 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccata 12200304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 12444777 - 12444732
Alignment:
Q  93 aaaccaccaagtaatcatctgttgactcgtcatatccaaaaccata 138  Q
    |||||||||||||||||||| |||||  |||||| |||||||||||    
T  12444777 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccata 12444732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 11005988 - 11006037
Alignment:
Q  89 actgaaaccaccaagtaatcatctgttgactcgtcatatccaaaaccata 138  Q
    ||||| |||||||||||||||||| |||| | |||||| |||||||||||    
T  11005988 actgataccaccaagtaatcatctcttgaatggtcatacccaaaaccata 11006037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 11024563 - 11024612
Alignment:
Q  89 actgaaaccaccaagtaatcatctgttgactcgtcatatccaaaaccata 138  Q
    ||||| |||||||||||||||||| |||| | |||||| |||||||||||    
T  11024563 actgataccaccaagtaatcatctcttgaatggtcatacccaaaaccata 11024612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 47451946 - 47451995
Alignment:
Q  93 aaaccaccaagtaatcatctgttgactcgtcatatccaaaaccataaaaa 142  Q
    ||||||| ||||||||||||||| |||||||||| ||||| | |||||||    
T  47451946 aaaccactaagtaatcatctgttaactcgtcatacccaaaccaataaaaa 47451995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 21979678 - 21979722
Alignment:
Q  94 aaccaccaagtaatcatctgttgactcgtcatatccaaaaccata 138  Q
    ||||||||||||||||| | |||||| |||||| |||||||||||    
T  21979678 aaccaccaagtaatcatttcttgactggtcataaccaaaaccata 21979722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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