View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17738_low_37 (Length: 223)
Name: NF17738_low_37
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17738_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 12861889 - 12862074
Alignment:
| Q |
19 |
cttattttgcgtttcttatcggaatttgtttccaagcttggaggtacccttaagatcgattttactttctaaatttcaatcaagattcaagattatagtg |
118 |
Q |
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| T |
12861889 |
cttattttgcgtttcttatcggaatttgtttccaagcttggaggtacccttaagatcgattttactttctaaatttcaatcaagattcaagattatagtg |
12861988 |
T |
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| Q |
119 |
ttaatgtctactgttaagatcgattaataactcttatgttcgtaactca-tttagagattatagtgttgttgagtattgcacttat |
203 |
Q |
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| T |
12861989 |
ttaatgtctactgttaagatcgattaatcactcttatgttcgtaactcattttagagattatagtgttattgagtattgcacttat |
12862074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 51 - 185
Target Start/End: Complemental strand, 12843560 - 12843425
Alignment:
| Q |
51 |
caagcttggaggtacccttaagatcgattttactttctaaatttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaataact |
150 |
Q |
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| T |
12843560 |
caagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaatcatt |
12843461 |
T |
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| Q |
151 |
cttatgttcgtaactca-tttagagattatagtgtt |
185 |
Q |
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| T |
12843460 |
cttatgttcttaactcattttagagattatagtgtt |
12843425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 13125837 - 13125745
Alignment:
| Q |
112 |
tatagtgttaatgtctactgttaagatcgattaataactcttatgttcgtaactca-tttagagattatagtgttgttgagtattgcacttat |
203 |
Q |
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| T |
13125837 |
tatagtgttaatgtgtactgttaagatcgattaatcactcttatgttcctaactcattttagagattatagtgttgttgaatattgcacttat |
13125745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 13125629 - 13125589
Alignment:
| Q |
90 |
aatttcaatcaagattcaagattatagtgttaatgtctact |
130 |
Q |
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| T |
13125629 |
aatttctatcaagattcaagatcatagtgttaatgtctact |
13125589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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