View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17738_low_4 (Length: 615)
Name: NF17738_low_4
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17738_low_4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 189 - 615
Target Start/End: Complemental strand, 7752681 - 7752255
Alignment:
| Q |
189 |
ctataatgtgtaatcacttttgcagatatcctcatcaataatgacaggaagcctttttcttgtctcaatagcattctatcttgaggttagttaggtaatt |
288 |
Q |
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| T |
7752681 |
ctataatgtgtaatcacttttgcagatatcctcatcaataatgacaggaagcctttttcttgtctcaatagcattctattttgaggttagttaggtaatt |
7752582 |
T |
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| Q |
289 |
attcaaagttgattcaatatcagaaccattactatgttaactagttcattatattgatactagggagttacagagaaggattctcctctatacagctttt |
388 |
Q |
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| T |
7752581 |
attcaaagttgattcaatatcagaaccattactatgttaactagttcattatattgatactagggagttacagagaaggattctcctctatacagctttt |
7752482 |
T |
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| Q |
389 |
tgggaatactttctgttgttgggcttgtggtatgttatgttgaactaagattgttgaacattgtttttgttccatgtgaattcaagagtttaagtactta |
488 |
Q |
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| T |
7752481 |
tgggaatactttctgttgttgggcttgtggtatgttatgttgaactaaaattgttgaacattgtttttgttccatgtgaattcaagtatttaagtactta |
7752382 |
T |
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| Q |
489 |
tcaattttatcaaatgtttctttttaggctatggtgattggctactctcttggacttggaccaatcccttggcttataatgtctgaggtaaaatttagac |
588 |
Q |
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| T |
7752381 |
tcaattttatcaaatgtttctttttaggctatggtgattggctactctcttggacttggaccaatcccttggcttataatgtctgaggtaaaatttagac |
7752282 |
T |
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| Q |
589 |
tttattttcacttcaccttataaacat |
615 |
Q |
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| T |
7752281 |
tttattttcacttcaccttataaacat |
7752255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 7752848 - 7752742
Alignment:
| Q |
16 |
atagtgaattcagttatcataatcagctttttcttctaggtcatagttactggaatcactacttggttggtggacaaaagtggaagaaggctacttctaa |
115 |
Q |
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| T |
7752848 |
atagtgaattcagttatcataatcagctttttcttctaggtcatagttactggaatcactacttggttggtggacaaaagtggaagaaggctacttctaa |
7752749 |
T |
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| Q |
116 |
tagttaa |
122 |
Q |
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||||||| |
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| T |
7752748 |
tagttaa |
7752742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 220 - 414
Target Start/End: Complemental strand, 7823526 - 7823334
Alignment:
| Q |
220 |
tcatcaataatgacaggaagcctttttcttgtctcaatagcattctatcttgaggttagttaggtaattattcaaagttgattcaatatcagaaccatta |
319 |
Q |
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| T |
7823526 |
tcatctataatgataggaagcttttttcttgtttcaatagcattctatcttgacgttatttagctaatcattcgaggttgattctacattagaaccttta |
7823427 |
T |
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| Q |
320 |
ctatgttaactagttcattatattgatactagggagttacagagaaggattctcctctatacagctttttgggaatactttctgttgttgggctt |
414 |
Q |
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| T |
7823426 |
ctatgttaactagttcattgtattgaggttaag--gttacgtacgaggattcttctctatacaactttctcggaataatttctgttggtgggctt |
7823334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 509 - 578
Target Start/End: Original strand, 32932548 - 32932617
Alignment:
| Q |
509 |
tttttaggctatggtgattggctactctcttggacttggaccaatcccttggcttataatgtctgaggta |
578 |
Q |
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| T |
32932548 |
ttttaaggttatggtaattgggttctctctaggacttggaccaatcccttggcttataatgtctgaggta |
32932617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 32932062 - 32932145
Alignment:
| Q |
15 |
tatagtgaattcagttatcataatcagctttttcttctaggtcatagttactggaatcactacttggttggtggacaaaagtgg |
98 |
Q |
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| T |
32932062 |
tatagtgaattcaattctcataatcagtattcttttccaggtcatagctactggagtagctacttggttggtggacaaaagtgg |
32932145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 509 - 578
Target Start/End: Original strand, 32938477 - 32938546
Alignment:
| Q |
509 |
tttttaggctatggtgattggctactctcttggacttggaccaatcccttggcttataatgtctgaggta |
578 |
Q |
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| T |
32938477 |
tttttaggctttggtaattggttttgctcttggcattggaccaatcccttggcttataatgtctgaggta |
32938546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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