View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17738_low_6 (Length: 542)
Name: NF17738_low_6
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17738_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 527
Target Start/End: Complemental strand, 36223089 - 36222580
Alignment:
| Q |
18 |
atcatcgtaaaggtagaaaagtaaaaagtatatctaaatggattcgtatccacttccatgatgcaacgctgcgatannnnnnnaactaggacaacatacc |
117 |
Q |
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| T |
36223089 |
atcattgtaaaggtagaaaagtaaaaagtatatctaaatggattcgtatccacttccatgatgcaacgctgcgatatttttttaactaggacaacatacc |
36222990 |
T |
|
| Q |
118 |
acttcacgtggtagtcctttttaacacgaaaaagaaattgttgcaccgctgcatcgtggcagagaatctgaatcctagttaaataccactgtctaataga |
217 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36222989 |
acttcacgtggtagtcctttttaacatgaaaaagaaattgttgcaccgctgcatcgtgggagagaatctgaatcctagttaaataccactgtctaataga |
36222890 |
T |
|
| Q |
218 |
ttctataaactcaagtgtattaatgcaaagacactactcaagatttacctatttcaaatttannnnnnngcaggctcaacctgatagggatcctgtgaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36222889 |
ttctataaactcaagtgtattaatgcaaagacactactcaagatttacctatttcaaatttatttttttacaggctcaacctgatagggatcctgtgaaa |
36222790 |
T |
|
| Q |
318 |
gaaaagtggatgataggaattatggtgacagccacagttgtaaaaattgggctgatgacatactgtcgcaggttcaaaaatgaaatagttagagcctatg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36222789 |
gaaaagtggatgataggaattatggtgacagccacagttgtaaaaattgggctgatgacatactgtcgcaggttcaaaaatgaaatagttagagcctatg |
36222690 |
T |
|
| Q |
418 |
ctcaagaccatttctttgatgtcattacaaactcaattggtctagccacggcagtgctagccatcaaattctattggtggcttgaccctcttggggctat |
517 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36222689 |
ctcaagaccatttctttgatgtcattacaaactcgattggtctagccacggcagtgctagccatcaaattctattggtggcttgaccctcttggggctat |
36222590 |
T |
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| Q |
518 |
cttggtaggt |
527 |
Q |
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|||||||||| |
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| T |
36222589 |
cttggtaggt |
36222580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 6577926 - 6577878
Alignment:
| Q |
331 |
taggaattatggtgacagccacagttgtaaaaattgggctgatgacata |
379 |
Q |
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| T |
6577926 |
taggaattatggtgacagccacagttgtaaaaattgggctcatgacata |
6577878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 22637287 - 22637335
Alignment:
| Q |
331 |
taggaattatggtgacagccacagttgtaaaaattgggctgatgacata |
379 |
Q |
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| T |
22637287 |
taggaattatggtgacagccaaagttgtaaaaattgggctcatgacata |
22637335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 276698 - 276650
Alignment:
| Q |
331 |
taggaattatggtgacagccacagttgtaaaaattgggctgatgacata |
379 |
Q |
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| T |
276698 |
taggaattatggtgacagccacagttgtaaaaattgggctcatgacata |
276650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 29709573 - 29709525
Alignment:
| Q |
331 |
taggaattatggtgacagccacagttgtaaaaattgggctgatgacata |
379 |
Q |
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| T |
29709573 |
taggaattatggtgacagccacagttgtaaaaattgggctcatgacata |
29709525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 332 - 379
Target Start/End: Original strand, 871512 - 871559
Alignment:
| Q |
332 |
aggaattatggtgacagccacagttgtaaaaattgggctgatgacata |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
871512 |
aggaattatggtgacagccacagttgtaaaaattgggctcatgacata |
871559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 25127668 - 25127620
Alignment:
| Q |
331 |
taggaattatggtgacagccacagttgtaaaaattgggctgatgacata |
379 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
25127668 |
taggaattatggtgacaaccacagttgtaaaaattgggctcatgacata |
25127620 |
T |
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