View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17738_low_7 (Length: 452)

Name: NF17738_low_7
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17738_low_7
NF17738_low_7
[»] chr1 (2 HSPs)
chr1 (12-429)||(7353070-7353487)
chr1 (375-420)||(18556386-18556431)
[»] chr5 (2 HSPs)
chr5 (283-334)||(8135624-8135675)
chr5 (74-112)||(35027529-35027567)
[»] chr3 (2 HSPs)
chr3 (216-334)||(52666946-52667064)
chr3 (375-420)||(41961580-41961625)
[»] chr7 (1 HSPs)
chr7 (375-416)||(11738152-11738193)
[»] chr4 (2 HSPs)
chr4 (70-113)||(30007467-30007510)
chr4 (376-433)||(19312407-19312463)
[»] chr6 (1 HSPs)
chr6 (375-420)||(17841530-17841575)


Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 12 - 429
Target Start/End: Original strand, 7353070 - 7353487
Alignment:
Q  12 acagaacatggtaaactttgattgtgttatcttagtttggcagaattatgatgtcctactgcgattttgacaaaagctacacttcagagtttcaacaaaa 111  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  7353070 acagaacatggtaaattttgattgtgttatctgagtttggcagaatcatgatgtcctactgtgattttgacaaaagctacacttcagagtttcatcaaaa 7353169  T
Q  112 tctcgttgaagttgtgatttcttcaaactcaacgtgattttaagcatgtattaagcttgagaaagaataaggtaatatagattaagatatggttatacct 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7353170 tctcgttgaagttgtgatttcttcaaactcaacgtgattttaagcatgtattaaacttgagaaagaataaggtaatatagattaagatatggttatacct 7353269  T
Q  212 ttacttcatcaatatccaccttgaggaagatgacttcaggtgtcttcttagcaatctcagctagaattggagcaataaaacggcatggaccacaccatga 311  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7353270 ttacttcatcaatatccaccttgaggaagatgacttcaggtatcttcttagcaatctcagctagaattggagcaataaaacggcatggaccacaccatga 7353369  T
Q  312 agcagtaaaatccaccacaatctattattccatgaaatgcaattcattataagcgttatcaattatgaaacacggacacttctctgattacgcgtgtctc 411  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| | || || ||||| |||||||||    
T  7353370 agcagtaaaatccaccacaatctattattcaatgaaatgcaattcattataagcgttatcaactatgaaatacggataattttcggattaggcgtgtctc 7353469  T
Q  412 agtgtcggaaaacgtgtc 429  Q
    ||||||||||||||||||    
T  7353470 agtgtcggaaaacgtgtc 7353487  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 18556386 - 18556431
Alignment:
Q  375 tatgaaacacggacacttctctgattacgcgtgtctcagtgtcgga 420  Q
    |||||| |||||||||||||| ||||| ||||||| ||||||||||    
T  18556386 tatgaagcacggacacttctcggattaggcgtgtcccagtgtcgga 18556431  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 8135675 - 8135624
Alignment:
Q  283 gcaataaaacggcatggaccacaccatgaagcagtaaaatccaccacaatct 334  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||| |||||||    
T  8135675 gcaatgaaacggcatggtccacaccaagaagcagtaaaatccacaacaatct 8135624  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 35027567 - 35027529
Alignment:
Q  74 gattttgacaaaagctacacttcagagtttcaacaaaat 112  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  35027567 gattttgataaaagctacacttcagagcttcaacaaaat 35027529  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 334
Target Start/End: Original strand, 52666946 - 52667064
Alignment:
Q  216 ttcatcaatatccaccttgaggaagatgacttcaggtgtcttcttagcaatctcagctagaattggagcaataaaacggcatggaccacaccatgaagca 315  Q
    |||||||| ||| |||||||||||| |||| |  ||   ||| ||||||||||| || | |||||| ||||| |||||||| || |||||||| ||||||    
T  52666946 ttcatcaacatcaaccttgaggaaggtgacatttggcagctttttagcaatctctgccaaaattggggcaatgaaacggcacgggccacaccaagaagca 52667045  T
Q  316 gtaaaatccaccacaatct 334  Q
    || ||||| || |||||||    
T  52667046 gtgaaatcaactacaatct 52667064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 41961580 - 41961625
Alignment:
Q  375 tatgaaacacggacacttctctgattacgcgtgtctcagtgtcgga 420  Q
    |||||| |||||||||||||| ||||| ||||||| ||||||||||    
T  41961580 tatgaagcacggacacttctcggattaggcgtgtcccagtgtcgga 41961625  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 416
Target Start/End: Original strand, 11738152 - 11738193
Alignment:
Q  375 tatgaaacacggacacttctctgattacgcgtgtctcagtgt 416  Q
    ||||||||||||||||| ||||||||| ||||||||||||||    
T  11738152 tatgaaacacggacactcctctgattaggcgtgtctcagtgt 11738193  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 30007510 - 30007467
Alignment:
Q  70 ctgcgattttgacaaaagctacacttcagagtttcaacaaaatc 113  Q
    ||||||||||| |||||| |||||||||||| ||||||||||||    
T  30007510 ctgcgattttgtcaaaagttacacttcagagcttcaacaaaatc 30007467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 433
Target Start/End: Complemental strand, 19312463 - 19312407
Alignment:
Q  376 atgaaacacggacacttctctgattacgcgtgtctcagtgtcggaaaacgtgtcgtat 433  Q
    |||||||||||||||||||| |||||  |||||||| ||||||| | |||||||||||    
T  19312463 atgaaacacggacacttctcagattagacgtgtctcggtgtcgg-acacgtgtcgtat 19312407  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 17841530 - 17841575
Alignment:
Q  375 tatgaaacacggacacttctctgattacgcgtgtctcagtgtcgga 420  Q
    |||||| |||||||||| ||| ||||| ||||||||||||||||||    
T  17841530 tatgaagcacggacactcctcggattaggcgtgtctcagtgtcgga 17841575  T

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