View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17738_low_8 (Length: 429)
Name: NF17738_low_8
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17738_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 40 - 416
Target Start/End: Complemental strand, 41820748 - 41820373
Alignment:
| Q |
40 |
accataggcaaattctgtacattatgatcaaaataagatacaaaaattgagattcaattaatattacaggaccaatttcaacacaaaccctaaaccccat |
139 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41820748 |
accataggcaaattctgtacattaagatcaaaataagatacaaaaattgagattcaattaatattacaggaccaatttcaacacaaaccctaaaccccat |
41820649 |
T |
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| Q |
140 |
aaatnnnnnnnntggtatttaatccaataagataattgtaaaaatgaaattgaaatgaactaactaaccatggtgggtttgaattctttcaatttctgca |
239 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41820648 |
aaataaaaaaa-tggtatttaatccaataagataattgtaaaaatgaaattgaaatgaactaactaaccatggtgggtttgaattctttcaatttctgca |
41820550 |
T |
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| Q |
240 |
atttcttaagctccttgccacgattctcgagttcttcatccttttgcttcaagatctcatctttggctttcaacagctcctcggtcttctctttctcgag |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41820549 |
atttcttaagctccttgccacgattctcgagttcttcatccttttgcttcaagatctcatctttggctttcaacagctcctcggtcttctctttctcgag |
41820450 |
T |
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| Q |
340 |
acgcaactgctccatcttttcctgcatctcgagcaaatcttgctcgaaagatcgttcctttggattttgttgtttct |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41820449 |
acgcaactgctccatcttttcctgcatctcgagcaaatcttgctcgaaagatcgttcctttggattttgttgtttct |
41820373 |
T |
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