View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17738_low_9 (Length: 428)
Name: NF17738_low_9
Description: NF17738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17738_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 9027354 - 9027187
Alignment:
| Q |
18 |
gtgagaaaaagaggaagcacgctcataaaggtaaaaaacaaacaaatctcgacaactttaatttgtctttgttttgataaagacatacattgtttaatta |
117 |
Q |
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| T |
9027354 |
gtgagaaaaagaggaagcacgctcataaaggtaaaaaacaaacaaatctcgacaacttt-----gtctttgttttgataaagacatacattgtttaatta |
9027260 |
T |
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| Q |
118 |
atctatatacattttatcactacttcatgttttgcaaatgtatggctaatcatataatatgatatggtccctc |
190 |
Q |
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| T |
9027259 |
atctatatacattttatcactatttcatgttttgcaaatgtatggctaatcatataatatgatatggtccctc |
9027187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 296 - 414
Target Start/End: Complemental strand, 9027085 - 9026964
Alignment:
| Q |
296 |
ctttatcagcacatggaaattcgatgtataccccctatcttttttctgtgattat---aattacaaacataaacctaataatacgtttctacattttaat |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9027085 |
ctttatcagcacatggaaattcgatgtataccccctatcttttttctgtgattattataattacaaacataaacctaataatacgtttctacattttaat |
9026986 |
T |
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| Q |
393 |
ccactcatttctatatatcatt |
414 |
Q |
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| T |
9026985 |
ccactcatttctatatatcatt |
9026964 |
T |
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