View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17739_high_11 (Length: 238)
Name: NF17739_high_11
Description: NF17739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17739_high_11 |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0038 (2 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 54925 - 55072
Alignment:
| Q |
34 |
ttatcatttaattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgtaaaaatggattccaatttctgttagtggtt |
133 |
Q |
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| T |
54925 |
ttatcatttaattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggtt |
55024 |
T |
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| Q |
134 |
ccaccttcggatgttcaaatgtaacctctgcatggatccattcatttt |
181 |
Q |
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| T |
55025 |
ccaccttcggatgttcacatgtaacctctgcatggatccattcatttt |
55072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 9e-57; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 28191882 - 28191735
Alignment:
| Q |
34 |
ttatcatttaattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgtaaaaatggattccaatttctgttagtggtt |
133 |
Q |
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|||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28191882 |
ttatcatttaattttatccttttataaggatcggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggtt |
28191783 |
T |
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| Q |
134 |
ccaccttcggatgttcaaatgtaacctctgcatggatccattcatttt |
181 |
Q |
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|||| ||||||||||| |||||||||||||||| |||||||||||| |
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| T |
28191782 |
ccactctcggatgttcatatgtaacctctgcatgattccattcatttt |
28191735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 28525730 - 28525554
Alignment:
| Q |
5 |
catcatcatcatcgtcatcaacaacgtcgttatcatttaattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgta |
104 |
Q |
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| T |
28525730 |
catcatcatcatcatcaacaacgacatcattatcatttgattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaa |
28525631 |
T |
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| Q |
105 |
aaaatggattccaatttctgttagtggttccaccttcggatgttcaaatgtaacctctgcatggatccattcatttt |
181 |
Q |
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| T |
28525630 |
aaaatggattccaatttctgttattggttccactaactgatgttcacatataatctctgcatgattccagtcatttt |
28525554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 28246844 - 28246699
Alignment:
| Q |
36 |
atcatttaattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgtaaaaatggattccaatttctgttagtggttcc |
135 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| |
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| T |
28246844 |
atcatttaattttatcttttcataaggattggtgaattgaatatcatccatgttattttgctctttgtaaaaatggattccaatttctgttattggttcc |
28246745 |
T |
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| Q |
136 |
accttcggatgttcaaatgtaacctctgcatggatccattcatttt |
181 |
Q |
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| T |
28246744 |
acctcctgatgttcacatataatctctgcatgattccactcatttt |
28246699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 28239854 - 28239682
Alignment:
| Q |
36 |
atcatttaattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgtaaaaatggattccaatttctgttagtggttcc |
135 |
Q |
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|||||||||||||| | |||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
28239854 |
atcatttaattttaacctttcttaaggattggtgaattgaatgtcatccatgttattttcgtgtttgaaaaaatggattccaatttctgttagtggttcc |
28239755 |
T |
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| Q |
136 |
accttcggatgttcaaatgtaacctctgcatggatccattcattttttacatatcttttgttcatgttgttga |
208 |
Q |
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|| || | |||||||||| ||||||||||||| ||||||||||||||| | | ||||||||| |||||||| |
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| T |
28239754 |
acatttgaatgttcaaatataacctctgcatgattccattcattttttaaaattattttgttcaagttgttga |
28239682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 5 - 180
Target Start/End: Complemental strand, 28329111 - 28328936
Alignment:
| Q |
5 |
catcatcatcatcgtcatcaacaacgtcgttatcatttaattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgta |
104 |
Q |
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||||||| ||||| ||||||| || || ||||||||||| ||||||||||||||||||| |||||||| ||| || ||||||||||||||||||||| | |
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| T |
28329111 |
catcatcttcatcatcatcaatgacatcattatcatttaactttatcttttcataaggatcggtgaatttaatgtcctccatgttatttttctgtttgaa |
28329012 |
T |
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| Q |
105 |
aaaatggattccaatttctgttagtggttccaccttcggatgttcaaatgtaacctctgcatggatccattcattt |
180 |
Q |
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| T |
28329011 |
aaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaacctctgcatgaatccattcattt |
28328936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 5 - 180
Target Start/End: Complemental strand, 28506747 - 28506572
Alignment:
| Q |
5 |
catcatcatcatcgtcatcaacaacgtcgttatcatttaattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgta |
104 |
Q |
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||||||| ||||| ||||||| || || ||||||||||| ||||||||||||||||||| |||||||| ||| || ||||||||||||||||||||| | |
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| T |
28506747 |
catcatcttcatcatcatcaatgacatcattatcatttaactttatcttttcataaggatcggtgaatttaatgtcctccatgttatttttctgtttgaa |
28506648 |
T |
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| Q |
105 |
aaaatggattccaatttctgttagtggttccaccttcggatgttcaaatgtaacctctgcatggatccattcattt |
180 |
Q |
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| T |
28506647 |
aaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaacctctgcatgaatccattcattt |
28506572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 47006 - 46861
Alignment:
| Q |
36 |
atcatttaattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgtaaaaatggattccaatttctgttagtggttcc |
135 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| |
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| T |
47006 |
atcatttaattttatcttttcataaggattggtgaattgaatatcatccatgttattttgctctttgtaaaaatggattccaatttctgttattggttcc |
46907 |
T |
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| Q |
136 |
accttcggatgttcaaatgtaacctctgcatggatccattcatttt |
181 |
Q |
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|||| | |||||||| || ||| ||||||||| |||| ||||||| |
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| T |
46906 |
acctcctgatgttcacatataatctctgcatgattccactcatttt |
46861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 40016 - 39844
Alignment:
| Q |
36 |
atcatttaattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgtaaaaatggattccaatttctgttagtggttcc |
135 |
Q |
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|||||||||||||| | |||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
40016 |
atcatttaattttaacctttcttaaggattggtgaattgaatgtcatccatgttattttcgtgtttgaaaaaatggattccaatttctgttagtggttcc |
39917 |
T |
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| Q |
136 |
accttcggatgttcaaatgtaacctctgcatggatccattcattttttacatatcttttgttcatgttgttga |
208 |
Q |
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|| || | |||||||||| ||||||||||||| ||||||||||||||| | | ||||||||| |||||||| |
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| T |
39916 |
acatttgaatgttcaaatataacctctgcatgattccattcattttttaaaattattttgttcaagttgttga |
39844 |
T |
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