View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17739_high_2 (Length: 654)
Name: NF17739_high_2
Description: NF17739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17739_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 122 - 638
Target Start/End: Complemental strand, 34673426 - 34672910
Alignment:
| Q |
122 |
aacaacaatagtattactaataatgtatctatcattcttttttccccttctaaattcccttccacaatacgaaatgaataagagtttaatgaatatacat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34673426 |
aacaacaatagtattactaataatgtatctatcattcttttttccccttctaaattcccttccacaatacgaaatgaataagagtttaatgaatatacat |
34673327 |
T |
|
| Q |
222 |
tgatagtgtcgcccaataatctttcacagttctgtcacttcattatattacttcataaatcatttacacaatgtaacactttttacactgtcaacgtaat |
321 |
Q |
| |
|
||||||||||||||||| || |||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34673326 |
tgatagtgtcgcccaatcatatttcacagttatgtcacttcattatattacttcctaaaacatttacacaatgtaacactttttacactgtcaacgtaat |
34673227 |
T |
|
| Q |
322 |
gaataaaataacaaaacaaaaagttggtaataaacagtaggtgaggagagactaaccttcttggcaggaaaaaccgttgcaatagcaaagtagtttcctg |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34673226 |
gaataaaataacaaaacaaaaagttggtaataaacagtaggtgaggagagactaaccttcttggcaggaaaaaccgtcgcaatagcaaagtagtttcctg |
34673127 |
T |
|
| Q |
422 |
cagcaccatcacccaataccttacaagtttccaatccatagcatttgacacactcagcagtcaatgaagtgagaggaaaattatgcgattccgcaatccc |
521 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34673126 |
cagcaccatcacccaatgccttacaagtttccaatccatagcatttgacacactcagcagtcaatgaagtgagaggaaaattatgcgattccgcaatccc |
34673027 |
T |
|
| Q |
522 |
tttacctgaagaaggaatagaaacctacaaaatcaatcaaaatatatgaaacgaatagtcataaaccaccatagtagcataaggacctgtttggataaac |
621 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34673026 |
tttacttgaagaaggaatagaaacctacaaaatcaatcaaaatatatgaaacgaataatcataaaccaccatagtagcataaggacctgtttggataaac |
34672927 |
T |
|
| Q |
622 |
agcttaattttcagctt |
638 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34672926 |
agcttaattttcagctt |
34672910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 34673537 - 34673455
Alignment:
| Q |
14 |
ttatactatcagtaggtcggttcctgcttgttctattgtggtgaaataaaatctgattattgacgtgtcctcgctactaatgt |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34673537 |
ttatactatcagtaggtcggttcctgcttgttctattgtggtgaaataaaatctgattattgacgtgtcctcgctactaatgt |
34673455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 372 - 565
Target Start/End: Original strand, 34790768 - 34790943
Alignment:
| Q |
372 |
actaaccttcttggcaggaaaaaccgttgcaatagcaaagtagtttcctgcagcaccatcacccaataccttacaagtttccaatccatagcatttgaca |
471 |
Q |
| |
|
||||||||| || | ||||||||||||||||||||||||||| ||||||||| || ||||| ||||| |||| ||||||||||||||| |
|
|
| T |
34790768 |
actaaccttgttagaaggaaaaaccgttgcaatagcaaagtaatttcctgcaacatcatcatccaatgtcttagaagtttccaatccatt---------- |
34790857 |
T |
|
| Q |
472 |
cactcagcagtcaatgaagtgagaggaaaattatgcgattccgcaatccctttacctgaagaaggaatagaaacctacaaaatcaatcaaaata |
565 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34790858 |
--------agtcaatgaagtaagaggaaaattatgcgattccgcaattcctttacttgaagaaggaatagaaacctacgaaatcaatcaaaata |
34790943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 167 - 267
Target Start/End: Original strand, 34790157 - 34790257
Alignment:
| Q |
167 |
ccttctaaattcccttccacaatacgaaatgaataagagtttaatgaatatacattgatagtgtcgcccaataatctttcacagttctgtcacttcatta |
266 |
Q |
| |
|
|||||||||| | | |||||||||||||||||||| ||||||||| ||||| |||||||| || ||||| || ||||||| || ||||||||||||| |
|
|
| T |
34790157 |
ccttctaaatgctcctccacaatacgaaatgaatacgagtttaataaatatgcattgataccttcatccaatcatatttcacaattgtgtcacttcatta |
34790256 |
T |
|
| Q |
267 |
t |
267 |
Q |
| |
|
| |
|
|
| T |
34790257 |
t |
34790257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 607 - 638
Target Start/End: Complemental strand, 41702377 - 41702346
Alignment:
| Q |
607 |
cctgtttggataaacagcttaattttcagctt |
638 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
41702377 |
cctgtttggataaacagcttaattttcagctt |
41702346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 608 - 638
Target Start/End: Complemental strand, 2964983 - 2964953
Alignment:
| Q |
608 |
ctgtttggataaacagcttaattttcagctt |
638 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2964983 |
ctgtttggataaacagcttaattttcagctt |
2964953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 601 - 638
Target Start/End: Complemental strand, 9237014 - 9236977
Alignment:
| Q |
601 |
taaggacctgtttggataaacagcttaattttcagctt |
638 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
9237014 |
taaggccctgtttggataaacaacttaattttcagctt |
9236977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University