View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17739_high_6 (Length: 362)
Name: NF17739_high_6
Description: NF17739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17739_high_6 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 2989832 - 2990193
Alignment:
| Q |
1 |
tcacaggttactccattctctctggtcttgccatgggaatggaacctatttgtggtcaagcttttggtgctaaaagattcaaactccttggtttaacaat |
100 |
Q |
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| T |
2989832 |
tcacaggttactccattctctctggtcttgccatgggaatggaacctatttgtggtcaagcttttggtgctaaaagattcaaactccttggtttaacaat |
2989931 |
T |
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| Q |
101 |
gcaaagaacagtgattcttcttcttgtaacttcaattttcatttcattcttatggcttaacatgaagagattattgcttttatgtggccaacaagaagat |
200 |
Q |
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| T |
2989932 |
gcaaagaacagtgattcttcttcttgtaacttcaattttcatttcattcttatggcttaacatgaagagattattgcttttatgtggccaacaagaagat |
2990031 |
T |
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| Q |
201 |
attgcaaatgttgcacaatcttacattctttattctcttcctgatcttgtagcacaatcattgctacaccctttgagaatctatcttcgatgccaatcca |
300 |
Q |
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| T |
2990032 |
attgcaaacgttgcacaatcttacattctttattctcttcctgatcttgtagcacaatcattgctacaccctttgagaatctatcttcgaagccaatcca |
2990131 |
T |
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| Q |
301 |
taacacttcctttaacatacagtgctactttgtctattcttcttcacattcctataaactat |
362 |
Q |
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| T |
2990132 |
taacacttcctttaacatacagtgctactttgtctattcttcttcacattcctataaactat |
2990193 |
T |
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Target: scaffold0039 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 23696 - 23776
Alignment:
| Q |
1 |
tcacaggttactccattctctctggtcttgccatgggaatggaacctatttgtggtcaagcttttggtgctaaaagattca |
81 |
Q |
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| T |
23696 |
tcactggttactccattctttctggtcttgctgttggtatggaaccaatttgtggtcaagcttttggtgctaaaaaattca |
23776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 45846416 - 45846330
Alignment:
| Q |
6 |
ggttactccattctctctggtcttgccatgggaatggaacctatttgtggtcaagcttttggtgctaaaagattcaaactccttggt |
92 |
Q |
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| T |
45846416 |
ggttactcaatcctctccggtctcgccgttggaatggaacctatttgtggacaagcttttggtgcaaaaagattcactctccttggt |
45846330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 51874445 - 51874498
Alignment:
| Q |
21 |
tctggtcttgccatgggaatggaacctatttgtggtcaagcttttggtgctaaa |
74 |
Q |
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| T |
51874445 |
tctggtttagccatgggaatggaacccatttgtggacaagcttatggagctaaa |
51874498 |
T |
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