View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17739_high_9 (Length: 305)
Name: NF17739_high_9
Description: NF17739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17739_high_9 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] scaffold0667 (1 HSPs) |
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|
Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 305
Target Start/End: Original strand, 41965979 - 41966273
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctca-aaaatccctcaatcgatccttaatccttcg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41965979 |
gattccgatcaacctcgaaatcacttcgatccttaatcgattcccacaacttcatcaaccttcacctcagaaaatccctcaatcgatccttaatccttcg |
41966078 |
T |
|
| Q |
111 |
actcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgttccactcaatcatcctttcttgcgtcacagcaccaacatcact |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41966079 |
actcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgttccactcaaccatcctttcttgcgtcacagcaccaacatcact |
41966178 |
T |
|
| Q |
211 |
cttctgggttcatgtaacggcctcctctacatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctggaaccc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41966179 |
cttctgggttcatgtaacggcctcctctgcatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctggaaccc |
41966273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 5351 - 5103
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaat-ccctcaatcgatccttaatccttcg |
110 |
Q |
| |
|
||||||||||||| || ||||||||| |||| ||||| |||| |||||||||||||||||||||| ||||||| |||||||| ||||||| |||||||| |
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|
| T |
5351 |
gattccgatcaacttcaaaatcacttaaatccataatcgattctcacaacttcatcaaccttcaccgcaaaaattccctcaatagatccttcatccttcg |
5252 |
T |
|
| Q |
111 |
actcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgttccactcaatcatcctttcttgcgtcacagcaccaacatcact |
210 |
Q |
| |
|
||||| | || ||||||| |||| || |||||||| ||||| |||||||||||||||||||| || |||||| |||| ||||||||||||| || |
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|
| T |
5251 |
actcagatccaatatctaccaaatcgaagatgatttctcaaacctcaccaccgccgttccactcaaccaccctttcacgcgtaacagcaccaacattgct |
5152 |
T |
|
| Q |
211 |
cttctgggttcatgtaacggcctcctctacatctccaatggcgaaatcg |
259 |
Q |
| |
|
||| | ||||||||||||||||||||| | | ||||| |||||||||| |
|
|
| T |
5151 |
cttatcggttcatgtaacggcctcctcgccgtttccaacggcgaaatcg |
5103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 24)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 8572758 - 8572987
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa-tccctcaatcgatccttaatccttcg |
110 |
Q |
| |
|
||||||||||||| || ||||||||| ||| ||||| ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
8572758 |
gattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaatcattcg |
8572857 |
T |
|
| Q |
111 |
actcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccg---ttccactcaatcatcctttcttgcgtcacagcaccaacatc |
207 |
Q |
| |
|
|| |||| ||| ||||||| ||||||| ||||||||| | ||||||||||||| |||||||||| |||||||||| || |||||||||| || |
|
|
| T |
8572858 |
acgcaactacgatatctaccaaatcgatgatgatttctctgatctaaccaccgccgagtttccactcaaccatcctttctccggtaacagcaccaaaatt |
8572957 |
T |
|
| Q |
208 |
actcttctgggttcatgtaacggcctcctc |
237 |
Q |
| |
|
|||||| | ||||||||||||||||||||| |
|
|
| T |
8572958 |
actcttatcggttcatgtaacggcctcctc |
8572987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 12 - 276
Target Start/End: Complemental strand, 10336703 - 10336444
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacct-caaaaatccctcaatcgatccttaatccttcg |
110 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||| |||| ||||| ||||||||||||||||| ||||| ||||||||| | | ||||| || |
|
|
| T |
10336703 |
gattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttcaccttcaaaattccctcaattttaacctcatcctccg |
10336604 |
T |
|
| Q |
111 |
actcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgttccactcaatcatcctttcttgcgtcacagcaccaacatcact |
210 |
Q |
| |
|
| ||| || || |||||||| || || ||| |||||||||||||||| ||||||||||| ||||||||| | | ||||||| ||||||| || |
|
|
| T |
10336603 |
tcgcaaaaccgacctctaccacctccat------ttccctaacctaaccaccgctgttccactcaaccatcctttcatccaccacagcaacaacatcgct |
10336510 |
T |
|
| Q |
211 |
cttctgggttcatgtaacggcctcctctacatctccaatggcgaaatcgatttctctaacccttac |
276 |
Q |
| |
|
||||| |||||||| || ||||||||| |||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
10336509 |
cttcttggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttac |
10336444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 143 - 264
Target Start/End: Complemental strand, 9357922 - 9357801
Alignment:
| Q |
143 |
atttctctaacctaaccaccgccgttccactcaatcatcctttcttgcgtcacagcaccaacatcactcttctgggttcatgtaacggcctcctctacat |
242 |
Q |
| |
|
||||||| ||| | |||||||||||||||||||| || |||||| |||| ||||||||||||| ||||| | ||||||||||||||||||||| ||| |
|
|
| T |
9357922 |
atttctcaaacttcaccaccgccgttccactcaaccaccctttcacgcgtaacagcaccaacatttctcttatcggttcatgtaacggcctcctcgccat |
9357823 |
T |
|
| Q |
243 |
ctccaatggcgaaatcgatttc |
264 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
9357822 |
ctccaatggcgaaatcgctttc |
9357801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 14551210 - 14551111
Alignment:
| Q |
13 |
attccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaatccctcaatcgatccttaatccttcgac |
112 |
Q |
| |
|
|||||||||||| || |||||||||| |||| ||||| ||||||||||||||||||| |||||||| |||| ||||||||| | |||||||||||||||| |
|
|
| T |
14551210 |
attccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctaaaaattccctcaattgttccttaatccttcgac |
14551111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 10372774 - 10372676
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacct-caaaaatccctcaatcgatccttaatccttc |
109 |
Q |
| |
|
||||||||||||| || |||||| || ||| |||||| |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
10372774 |
gattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaatcgatccttaatccttc |
10372676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 9316917 - 9316816
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa----tccctcaatcgatccttaatcct |
107 |
Q |
| |
|
||||||||||||| || ||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9316917 |
gattccgatcaacttcaaaatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaataattccctcaatcgatccttaatcct |
9316818 |
T |
|
| Q |
108 |
tc |
109 |
Q |
| |
|
|| |
|
|
| T |
9316817 |
tc |
9316816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 9292820 - 9292719
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa-tccctcaatcgatccttaatccttcg |
110 |
Q |
| |
|
|||||||||||| || ||||||||| |||| ||||| |||| |||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
9292820 |
gattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaattccctcaaccgatccttaatccttcg |
9292721 |
T |
|
| Q |
111 |
ac |
112 |
Q |
| |
|
|| |
|
|
| T |
9292720 |
ac |
9292719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 9321882 - 9321789
Alignment:
| Q |
13 |
attccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa-tccctcaatcgatccttaatc |
105 |
Q |
| |
|
|||||||||||| || ||||||||| |||| ||||| |||| ||| |||||||||||||||| |||||||| ||||||| ||||||||||||| |
|
|
| T |
9321882 |
attccgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttcatctcaaaaattccctcagtcgatccttaatc |
9321789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 10348695 - 10348622
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaat |
85 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||| |||||| ||| ||||||||||||||||| |||||| |
|
|
| T |
10348695 |
gattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatcaaccttcacctaaaaaat |
10348622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 9283431 - 9283502
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaa |
83 |
Q |
| |
|
||||||||||||| || ||||||||||||||| |||| |||| ||||| |||||||||||||||||||||| |
|
|
| T |
9283431 |
gattccgatcaacttctaaatcacttcgatccctaatagattctcacaaattcatcaaccttcacctcaaaa |
9283502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 9060355 - 9060478
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaat----ccctcaatcgatccttaatcct |
107 |
Q |
| |
|
||||||||||||| || ||||||||| |||||||||| |||| |||||||||| |||||| ||||||||||| |||||||||||| ||||||| |
|
|
| T |
9060355 |
gattccgatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcactaacctttacctcaaaaataatcccctcaatcgatttataatcct |
9060454 |
T |
|
| Q |
108 |
tcgactcaacactgatctctacca |
131 |
Q |
| |
|
||||| ||| | ||||||||||| |
|
|
| T |
9060455 |
tcgacacaaatccgatctctacca |
9060478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 7114902 - 7114975
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaat |
85 |
Q |
| |
|
||||||||||||| || ||||||||| |||||||||| |||||||||| |||||||||||||| || |||||| |
|
|
| T |
7114902 |
gattccgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaaccttcatcttaaaaat |
7114975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 10354037 - 10353932
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctca-aaaatccctcaatcgatccttaatccttcg |
110 |
Q |
| |
|
||||||||||||| || |||||| || |||| ||||| ||||| |||| ||||||||||||||||||| ||| |||| ||||| ||||||||| ||||| |
|
|
| T |
10354037 |
gattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaaccttcacctcagaaattcccccaatcaatccttaattcttcg |
10353938 |
T |
|
| Q |
111 |
actcaa |
116 |
Q |
| |
|
| |||| |
|
|
| T |
10353937 |
attcaa |
10353932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 9275416 - 9275333
Alignment:
| Q |
11 |
tgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa-tccctcaat |
93 |
Q |
| |
|
||||||||||||| ||| ||||||||| ||| || || ||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
9275416 |
tgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaaccttcatctcaaaaattccctcaat |
9275333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 9358002 - 9357935
Alignment:
| Q |
18 |
gatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaat |
85 |
Q |
| |
|
||||||| || ||||||||| |||||||||| |||| ||||||||||| |||||||||||||||||| |
|
|
| T |
9358002 |
gatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcataaaccttcacctcaaaaat |
9357935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 9329491 - 9329418
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaat |
85 |
Q |
| |
|
||||||| ||||| || ||||||||| |||| ||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
9329491 |
gattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat |
9329418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 8577689 - 8577752
Alignment:
| Q |
21 |
caacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa |
84 |
Q |
| |
|
|||| ||||||||| || |||||||||| |||||||||||||||||||| || |||||||||| |
|
|
| T |
8577689 |
caacttcgaaatcaatttgatccttaattgattcccacaacttcatcaacttttacctcaaaaa |
8577752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 17565557 - 17565614
Alignment:
| Q |
201 |
caacatcactcttctgggttcatgtaacggcctcctctacatctccaatggcgaaatc |
258 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||| |||||||| ||| ||||| |
|
|
| T |
17565557 |
caacattactcttctgggttcatgtaacggtctcctctgtatctccaacggcaaaatc |
17565614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 7612788 - 7612716
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa |
84 |
Q |
| |
|
|||||||||||| || ||||| ||| ||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
7612788 |
gattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttcacctcaaaaa |
7612716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 9365487 - 9365415
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa |
84 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| ||||| |||| |||| ||||| |||||| || |||||||| |
|
|
| T |
9365487 |
gattccgatcaacctcaaaatcacttaaatccataatcgattctcacaccttcaccaacctccatctcaaaaa |
9365415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 10372529 - 10372441
Alignment:
| Q |
217 |
ggttcatgtaacggcctcctctacatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctggaaccc |
305 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| ||| || ||| |||| |||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
10372529 |
ggttcatgtaacggcctcctcgccatctgcaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccc |
10372441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 12011850 - 12011922
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa |
84 |
Q |
| |
|
||||||| ||||| || ||||||||| |||| ||||| |||| |||||||||| ||| |||||||||||||| |
|
|
| T |
12011850 |
gattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttcacctcaaaaa |
12011922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 7115114 - 7115156
Alignment:
| Q |
217 |
ggttcatgtaacggcctcctctacatctccaatggcgaaatcg |
259 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
7115114 |
ggttcatgtaacggcctcctcgccatctccaatggccaaatcg |
7115156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 8578782 - 8578854
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa |
84 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| || ||||||||| ||||| ||| | | |||||||||| |
|
|
| T |
8578782 |
gattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaacattacctcaaaaa |
8578854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 29442616 - 29442770
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacct-caaaaatccctcaatcgatccttaatccttcg |
110 |
Q |
| |
|
||||||| ||||| ||||||||||||| |||| ||||| ||||||| ||||||||||| |||||||| ||||| | ||||||||| |||||||||||||| |
|
|
| T |
29442616 |
gattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatccttcg |
29442715 |
T |
|
| Q |
111 |
actcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgtt |
168 |
Q |
| |
|
|| |||| |||| ||||||| || || |||||||||||||||||||||| |||| |
|
|
| T |
29442716 |
acacaactttgatttctaccaaatc---gaagatttctctaacctaaccaccggcgtt |
29442770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 29424106 - 29423934
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaatccct-caatcgatccttaatccttcg |
110 |
Q |
| |
|
||||||| |||||||| |||||||||| ||| ||||| ||||||||| ||||||||| ||||||||| | ||| ||| |||||| |||||||||||||| |
|
|
| T |
29424106 |
gattccgttcaacctcaaaatcacttcaatctctaatcgattcccacagcttcatcaagcttcacctccataattccttcaatcgttccttaatccttcg |
29424007 |
T |
|
| Q |
111 |
actcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgttccactcaatcatcctttc |
186 |
Q |
| |
|
|| |||| ||||| ||||||| || | ||||||||||||||||| ||||||||| |||||||| ||||||| |
|
|
| T |
29424006 |
acacaactctgatttctaccaaatc---aacgatttctctaacctaactaccgccgttaaactcaatcctcctttc |
29423934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 29452608 - 29452756
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacct-caaaaatccctcaatcgatccttaatccttcg |
110 |
Q |
| |
|
||||||| |||||||| |||||||||| |||| ||||| |||| |||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
29452608 |
gattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaatccttcg |
29452707 |
T |
|
| Q |
111 |
actcaacactgatctctaccagttcgatgaggatttctctaacctaaccacc |
162 |
Q |
| |
|
|| |||| ||| | ||||||| || | ||||||||||||||||||||| |
|
|
| T |
29452708 |
acacaactctgttttctaccaaatc---aacgatttctctaacctaaccacc |
29452756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 29467082 - 29467230
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacct-caaaaatccctcaatcgatccttaatccttcg |
110 |
Q |
| |
|
||||||| |||||||| |||||||||| |||| ||||| ||||||||||||||||||| |||||||| | ||| ||||||||||| | |||||||||||| |
|
|
| T |
29467082 |
gattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctccgaaattccctcaatcgtttcttaatccttcg |
29467181 |
T |
|
| Q |
111 |
actcaacactgatctctaccagttcgatgaggatttctctaacctaaccacc |
162 |
Q |
| |
|
|| |||| | ||| ||||||| || | ||||||||||||||||||||| |
|
|
| T |
29467182 |
acacaactccgatttctaccaaatc---aacgatttctctaacctaaccacc |
29467230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 26575771 - 26575666
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctca-aaaatccctcaatcgatccttaatccttcg |
110 |
Q |
| |
|
||||||||||||| || ||||||||| || ||||||| ||||| |||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||| |
|
|
| T |
26575771 |
gattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaaccttcacctcagaaattcccccaatcgatccttaatccttcg |
26575672 |
T |
|
| Q |
111 |
actcaa |
116 |
Q |
| |
|
| |||| |
|
|
| T |
26575671 |
attcaa |
26575666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 562034 - 561980
Alignment:
| Q |
40 |
atccttaatcaattcccacaacttcatcaaccttcacctcaaaaa-tccctcaat |
93 |
Q |
| |
|
|||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
562034 |
atccataatcgattcccacaacttcactaaccttcacctcaaaaactccctcaat |
561980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 37463414 - 37463314
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaat-ccctcaatcgatccttaatccttcg |
110 |
Q |
| |
|
||||||||||||| || ||||||||| ||| |||||| |||| |||||||||||||||||||| ||||||||| ||||||||| |||| ||||| |||| |
|
|
| T |
37463414 |
gattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatccgtaatcattcg |
37463315 |
T |
|
| Q |
111 |
a |
111 |
Q |
| |
|
| |
|
|
| T |
37463314 |
a |
37463314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 36225642 - 36225571
Alignment:
| Q |
12 |
gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaa |
83 |
Q |
| |
|
||||||||||||| || ||||||||| ||| |||||| |||| |||||||||| || ||||||||||||| |
|
|
| T |
36225642 |
gattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatcttcacctcaaaa |
36225571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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