View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17739_low_10 (Length: 289)
Name: NF17739_low_10
Description: NF17739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17739_low_10 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 4 - 289
Target Start/End: Original strand, 47385654 - 47385939
Alignment:
| Q |
4 |
ggaggagcagagagaaccttgtagtccagtattaatagctactaagaaaccaaaaatccataattttccaccacctttgacaacgatgagaggatcagaa |
103 |
Q |
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| T |
47385654 |
ggaggagcaaagagaaccttgtagtccagtattaatagctactaagaaaccaaaaatccataattttccaccacctttgacaacgatgagaggatcagaa |
47385753 |
T |
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| Q |
104 |
tctcttcgtgttagaccccaccgtgaagatggtaggttagtaattgaagtcacaaaggtcccaccaagtacctcatgttttcaagctgatagaagccatg |
203 |
Q |
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| T |
47385754 |
tctcttcgtgttagaccccaccgtgaagatggtaggttagtaattgaagtcacaaaggtcccaccaagtacatcatgttttcaagctgatagaagccatg |
47385853 |
T |
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| Q |
204 |
gccgtcttcgtctctgttttttgacaaatgagactacaagttttgacccggaagaagaagaggatgttgatgttgatgatgatgat |
289 |
Q |
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| T |
47385854 |
gccgtcttcgtctctgttttttgacaaatgagactacaagttttgacccggaacaagaagaggatgttgatgttgatgatgatgat |
47385939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 262
Target Start/End: Complemental strand, 47373275 - 47373020
Alignment:
| Q |
7 |
ggagcagagagaaccttgtagtccagtattaatagctactaagaaaccaaaaatccataattttccaccacctttgacaacgatgagaggatcagaatct |
106 |
Q |
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| T |
47373275 |
ggagcaaagacaaccttgttctcaagttttagcagctactaagaaagtgaaaactcagaattttccaccacctttgacaaccataagaggatcagaatct |
47373176 |
T |
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| Q |
107 |
cttcgtgttagaccccaccgtgaagatggtaggttagtaattgaagtcacaaaggtcccaccaagtacctcatgttttcaagctgatagaagccatggcc |
206 |
Q |
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| T |
47373175 |
tttcatgttagaacccaccgtggagatggaaggttggtgattgaagtcactaaggtcccaccaagtacttcttgctttcaagctgatagaagccatggct |
47373076 |
T |
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| Q |
207 |
gtcttcgtctctgttttttgacaaatgagactacaagttttgacccggaagaagaa |
262 |
Q |
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| T |
47373075 |
gtcttcgtctctattttttgacaaatgagactacaagttttgacccggaagaagaa |
47373020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 20976602 - 20976673
Alignment:
| Q |
125 |
cgtgaagatggtaggttagtaattgaagtcacaaaggtcccaccaagtacctcatgttttcaagctgataga |
196 |
Q |
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| T |
20976602 |
cgtgaagatggaaggttggcaattgaagtaaaaaaggtcccaccaagtacctcatgttttcaagctgataga |
20976673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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