View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17739_low_11 (Length: 239)
Name: NF17739_low_11
Description: NF17739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17739_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 14074853 - 14074632
Alignment:
| Q |
1 |
tctcgttagctcggtccttaatggtgggtaccagtcccaacttctcagccataatatcaatagtttggaacgaaacgatcaatccaagatcgggattaga |
100 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14074853 |
tctcattagctcggtccttaatggtgggaaccagtcccaacttctcagccataatatcaatagtttggaacgaaacgatcaatcctagatcgggattaga |
14074754 |
T |
|
| Q |
101 |
actactattctgcaaacgaccaagagacgttgagtgaacatcactggatgctccattcgacttagcaatgacgtcggagagaccatcatcgacaatgaga |
200 |
Q |
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||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
14074753 |
actactattctgccaacgaccaagagacgatgagggaacatcactggatgctccgttcgacttagcaatgacgttggagagaccatcatcgacgatgaga |
14074654 |
T |
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| Q |
201 |
gggttactgggactaccgttat |
222 |
Q |
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||||||||||||||||| |||| |
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| T |
14074653 |
gggttactgggactaccattat |
14074632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 13609796 - 13609579
Alignment:
| Q |
1 |
tctcgttagctcggtccttaatggtgggtaccagtcccaacttctcagccataatatcaatagtttggaacgaaacgatcaatccaagatcgggattaga |
100 |
Q |
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|||| |||||||||||||||||| | || |||||||||||| ||||||||||| |||||||||||| ||||| || |||||||||| ||||||||||||| |
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| T |
13609796 |
tctcattagctcggtccttaatgatcggaaccagtcccaacctctcagccatagtatcaatagttttgaacgcaaggatcaatccacgatcgggattaga |
13609697 |
T |
|
| Q |
101 |
actactattctgcaaacgaccaagagacgttgagtgaacatcactggatgctccattcgacttagcaatgacgtcggagagaccatcatcgacaatgaga |
200 |
Q |
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| T |
13609696 |
accatgtttctgccaacgattaacagccgatgagagaaaatcaacggactctccattcggcttagcaatgacggtggagagaccaccatcgttgaggaga |
13609597 |
T |
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| Q |
201 |
gggttactgggactaccg |
218 |
Q |
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|||||| |||||| |||| |
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| T |
13609596 |
gggttattgggaccaccg |
13609579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 14150258 - 14150203
Alignment:
| Q |
7 |
tagctcggtccttaatggtgggtaccagtcccaacttctcagccataatatcaata |
62 |
Q |
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||||||||||||||||||| || ||||||||||||||||||| |||| |||||||| |
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| T |
14150258 |
tagctcggtccttaatggtcggaaccagtcccaacttctcagtcatagtatcaata |
14150203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 218
Target Start/End: Original strand, 36014204 - 36014377
Alignment:
| Q |
45 |
tcagccataatatcaatagtttggaacgaaacgatcaatccaagatcgggattagaactactattctgcaaacgaccaagagacgttgagtgaacatcac |
144 |
Q |
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||||||||| || ||||||||| ||||| || |||||||||| ||||||||||||||| | ||||||| |||| || ||||| | ||| ||| ||||| |
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| T |
36014204 |
tcagccatagtaccaatagttttgaacgcaaggatcaatccacgatcgggattagaaccgcgattctgccaacggccgagagaagacgagagaaaatcac |
36014303 |
T |
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| Q |
145 |
tggatgctccattcgacttagcaatgacgtcggagagaccatcatcgacaatgagagggttactgggactaccg |
218 |
Q |
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||| || || || | ||||||||||||| |||||||||| ||||| || ||||||||||||||||| |||| |
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| T |
36014304 |
cggaagcaccgttaggcttagcaatgacggtggagagaccaccatcggtaaggagagggttactgggaccaccg |
36014377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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